Integrated active flux microfluidic devices and methods

• US 7,351,376 B1
• Filed: 11/28/2000
• Issued: 04/01/2008
• Est. Priority Date: 06/05/2000
• Status: Expired due to Fees

• Current Assignee: California Institute of Technology
• Original Assignee: California Institute of Technology
• Inventors: Chou, Hou-Pu, Quake, Stephen R.
• Primary Examiner(s): SINES, BRIAN J
• Application Number:
  US09/724,548
• Time in Patent Office: 2,681 Days
• Field of Search: 422/50, 422/55, 422/63, 422/68.1, 422/81, 422/82, 422100-104, 73/10.1, 73/10.2, 436/43, 436/63, 436/180
• US Class Current: 422/504
• CPC Class Codes: B01F 25/433 Mixing tubes wherein the shape of the tube influences the mixing, e.g. mixing tubes with varying cross-section or provided with inwardly extending profiles
• CPC Class Codes: B01F 25/4331 Mixers with bended, curved, coiled, wounded mixing tubes or comprising elements for bending the flow
• CPC Class Codes: B01F 33/3022 the components being formed by independent droplets which are alternated, the mixing of the components being achieved by diffusion between droplets
• CPC Class Codes: B01F 33/3039 with mixing achieved by diffusion between layers
• CPC Class Codes: B01F 35/71 Feed mechanisms with proportioning B01F35/80
• CPC Class Codes: B01F 35/712 for feeding fluids
• CPC Class Codes: B01F 35/71755 using means for feeding components in a pulsating or intermittent manner
• CPC Class Codes: B01F 35/717611 Peristaltic pumps
• CPC Class Codes: B01F 35/71805 using valves, gates, orifices or openings
• CPC Class Codes: B01L 2200/0647 Handling flowable solids, e.g. microscopic beads, cells, particles
• CPC Class Codes: B01L 2200/0689 Sealing
• CPC Class Codes: B01L 2200/10 Integrating sample preparation and analysis in single entity, e.g. lab-on-a-chip concept
• CPC Class Codes: B01L 2300/0636 Integrated biosensor, microarrays
• CPC Class Codes: B01L 2300/0816 Cards, e.g. flat sample carriers usually with flow in two horizontal directions
• CPC Class Codes: B01L 2300/0829 Multi-well plates; Microtitration plates
• CPC Class Codes: B01L 2300/0861 Configuration of multiple channels and/or chambers in a single devices
• CPC Class Codes: B01L 2300/0867 Multiple inlets and one sample wells, e.g. mixing, dilution
• CPC Class Codes: B01L 2300/088 Channel loops
• CPC Class Codes: B01L 2300/0887 Laminated structure
• CPC Class Codes: B01L 2300/123 Flexible; Elastomeric
• CPC Class Codes: B01L 2400/0418 : electro-osmotic flow [EOF]
• CPC Class Codes: B01L 2400/043 : magnetic forces
• CPC Class Codes: B01L 2400/0481 : squeezing of channels or chambers
• CPC Class Codes: B01L 2400/0638 : membrane valves, flap valves
• CPC Class Codes: B01L 2400/0655 : pinch valves
• CPC Class Codes: B01L 2400/0694 : vents used to stop and induce flow, backpressure valves
• CPC Class Codes: B01L 3/02 : Burettes; Pipettes
• CPC Class Codes: B01L 3/5027 : by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip B01L3/5023 takes precedence; micromixers B01F33/30; microreactors for synthesis B01J19/0093; microcapillary devices in general B81B1/00
• CPC Class Codes: B01L 3/502707 : characterised by the manufacture of the container or its components by shaping or joining plastic parts B29C59/00, B29C65/00; by laminating B32B37/00; manufacture of microstructural devices in general B81C
• CPC Class Codes: B01L 3/50273 : characterised by the means or forces applied to move the fluids micropumps F04B19/006, of the membrane type F04B43/043
• CPC Class Codes: B01L 3/502738 : characterised by integrated valves microvalves F16K99/0001
• CPC Class Codes: B01L 3/502753 : characterised by bulk separation arrangements on lab-on-a-chip devices, e.g. for filtration or centrifugation separation in general B01D; microapparatus for analysis using electrophoresis G01N27/44791; sample preparation G01N1/28
• CPC Class Codes: B01L 3/502761 : specially adapted for handling suspended solids or molecules independently from the bulk fluid flow, e.g. for trapping or sorting beads, for physically stretching molecules investigating characteristics of particles G01N15/00
• CPC Class Codes: C12M 1/02 : with agitation means; with heat exchange means
• CPC Class Codes: C12Q 1/6816 : characterised by the detection means C12Q1/6804 takes precedence
• CPC Class Codes: C12Q 2565/629 : being a microfluidic device
• CPC Class Codes: G01N 33/53 : Immunoassay; Biospecific binding assay; Materials therefor
• CPC Class Codes: Y10T 137/0318 : Processes
• CPC Class Codes: Y10T 137/0329 : Mixing of plural fluids of diverse characteristics or conditions
• CPC Class Codes: Y10T 137/2218 : Means [e.g., valve] in control input
• CPC Class Codes: Y10T 137/2224 : Structure of body of device
• CPC Class Codes: Y10T 436/11 : Automated chemical analysis
• CPC Class Codes: Y10T 436/145555 : Hetero-N
• CPC Class Codes: Y10T 436/173845 : Amine and quaternary ammonium
• CPC Class Codes: Y10T 436/2575 : Volumetric liquid transfer

Abstract

The invention relates to a microfabricated device for the rapid detection of DNA, proteins or other molecules associated with a particular disease. The devices and methods of the invention can be used for the simultaneous diagnosis of multiple diseases by detecting molecules (e.g. amounts of molecules), such as polynucleotides (e.g., DNA) or proteins (e.g., antibodies), by measuring the signal of a detectable reporter associated with hybridized polynucleotides or antigen/antibody complex. In the microfabricated device according to the invention, detection of the presence of molecules (i.e., polynucleotides, proteins, or antigen/antibody complexes) are correlated to a hybridization signal from an optically-detectable (e.g. fluorescent) reporter associated with the bound molecules. These hybridization signals can be detected by any suitable means, for example optical, and can be stored for example in a computer as a representation of the presence of a particular gene Hybridization probes can be immobilized on a substrate that forms part of or is exposed to a channel or channels of the device that form a closed loop, for circulation of sample to actively contact complementary probes. Universal chips according to the invention can be fabricated not only with DNA but also with other molecules such as RNA, proteins, peptide nucleic acid (PNA) and polyamide molecules.

Claims

1. A microfluidic device comprising:

a loop channel communicating with one or more service channels, wherein each service channel comprises a microvalve that when closed separates the service channel and the loop channel and wherein when said microvalves are closed said loop channel is a closed path, and

a peristaltic pump comprising at least three cooperating microvalves within the loop channel,

wherein the loop channel resides in a layer of elastomeric material and the microvalves comprise an elastomeric membrane.

2. A device of claim 1, wherein said one or more service channels comprise at least one inlet channel and one outlet channel.

3. A device of claim 1, further comprising a set of target molecules disposed within the loop channel.

4. A device of claim 3, wherein the target molecules are polynucleotide probes.

5. A device of claim 3, wherein the target molecules are protein probes.

6. A device of claim 3, wherein the target molecules are antibodies.

7. A device of claim 3, further comprising at least one detection region coincident with at least a portion of the loop channel.

8. A device of claim 3, further comprising at least one detection region coincident with at least a portion of the loop channel and at least one detector associated with at least one detection region.

9. A device of claim 1, wherein the dimensions of the loop channel are between about 10 μ

m and about 200 μ

m in width and between about 2 μ

m and about 20 μ

m in depth.

10. A device of claim 1, wherein the loop channel resides in a layer of transparent elastomeric material.

11. A device of claim 10, further comprising at least one detection region coincident with at least a portion of the loop channel.

12. A device of claim 1, wherein the elastomeric layer is adjacent to a substrate layer.

13. A device of claim 10, wherein the elastomeric layer is adjacent to a transparent substrate layer.

14. A device of claim 1, wherein the loop and service channels reside in a treatment layer, and further comprising a control layer adjacent to the treatment layer and carrying control lines.

15. A device of claim 14, wherein the treatment and control layers are elastomeric.

16. A device of claim 15, wherein the treatment and control layers are bonded to each other.

17. A device of claim 16, wherein at least one of the treatment and control layers is transparent.

18. A device of claim 14, wherein the control lines comprise at least one channel which is carried by the control layer and which intersects at least one channel carried by the treatment layer.

19. A device of claim 18, wherein at least one intersection of channels forms a microvalve.

20. A device of claim 19, wherein the microvalve comprises a deformable membrane between a treatment channel and a control channel.

21. A device of claim 19, wherein the control channels are supplied with a pressurized fluid.

22. A device of claim 20, wherein the control channels are supplied with air.

23. A device of claim 22, further comprising a transparent substrate layer adjacent to at least one of the treatment and control layers, and wherein at least one of the treatment and control layers is also transparent.

24. A device of claim 20, further comprising a set of target molecules disposed within the loop channel and at least one detection region coincident with at least a portion of the loop channel.

25. A device of claim 24, wherein the loop channel is circular.

46. A microfluidic device according to claim 1, wherein the loop channel comprises at least one pair of interconnected parallel and antiparallel channels.

47. A microfluidic device according to claim 46, wherein the loop channel comprises a plurality of pairs of interconnected parallel and anti-parallel channels.

26. A microfluidic device comprising:

a treatment layer having elastomeric fluid channels comprising

a loop channel,

a loop inlet channel, and

a loop outlet channel,

a control layer adjacent to the treatment layer and having elastomeric control channels, wherein at least one control channel intersects each of the inlet and outlet channels to form microvalves, said microvalves comprising an elastomeric membrane between the control channel and the fluid channel which can be deformed where the channels intersect to close the microvalve, and

at least three control channels intersect the loop channel to form a peristaltic pump.

27. A device of claim 26, wherein the elastomeric material is transparent.

28. A device of claim 26, wherein target molecules are disposed in the loop channel.

29. A device of claim 28, wherein the target molecules are patterned on a surface of the loop channel.

30. A device of claim 29, wherein the patterned surface is a transparent substrate that seals at least a portion of the length of the loop channel.

31. A device of claim 26, wherein the control channels receive a pressurized gas.

32. A device of claim 31, wherein the loop channel receives fluid from the inlet channel.

33. A device of claim 32, wherein the fluid is an aqueous liquid and the pressurized gas is air.

34. A device of claim 33, wherein target molecules are in the loop channel, and further comprising at least one detection region coincident with at least a portion of the loop.

35. A device of claim 34, wherein the target molecules are patterned on a transparent substrate that seals at least a portion of the length of the loop channel.

36. A device of claim 35, wherein the pattern of target molecules coincides with a detection region examined by an optical detector.

37. A device of claim 36, wherein the target molecules are labeled with a reporter.

38. A device of claim 36, wherein the target molecules are labeled with a fluorescent reporter.

39. A device of claim 36, wherein target molecules are polynucleotides.

40. A device of claim 36, wherein target molecules are polypeptides.

41. A device of claim 36, wherein target molecules are antibodies.

42. A device of claim 26, wherein the elastomer is a molded silicon elastomer.

43. A device of claim 26, wherein channels are formed by soft lithography.

44. A device of claim 26, further comprising at least one mixing channel in communication with a loop inlet channel.

45. A device of claim 44, wherein the mixing channel is on the treatment layer and has at least one microvalve provided by an intersecting control channel on the control layer.

48. A device according to claim 26 wherein the control lines comprise at least three parallel channels which are carried by the control layer, in which each of the at least three parallel channels intersects at least one channel carried by the treatment layer.

49. A microfluidic device according to claim 26 wherein the loop channel comprises at least one pair of interconnected parallel and antiparallel channels.

50. A microfluidic device according to claim 49 wherein the loop channel comprises a plurality of pairs of interconnected parallel and antiparallel channels.

51. A microfluidic device according to claim 26 wherein the at least three control channels are parallel channels.

52. A microfluidic device comprising:

a plurality of loop channels, each loop channel communicating with at least one service channel;

wherein each loop channel is associated with a peristaltic pump comprising at least three microvalves acting within the loop channel.

53. A microfluidic device according to claim 52 wherein a set of target molecules is disposed within each loop channel.

61. A microfluidic device according to claim 52 having 96 loops.

62. A microfluidic device according to claim 52 having 384 loops.

63. A microfluidic device according to claim 52 having 1536 loops.

54. A microfluidic device comprising:

a treatment layer having elastomeric fluid channels comprising

at least one inlet channel,

at least one outlet channel, and

a plurality of loop channels; and

a control layer adjacent to the treatment layer and having a plurality of parallel elastomeric control channels, wherein at least three control channels intersect each loop channel to form a peristaltic pump.

55. A microfluidic device according to claim 54 wherein a set of target molecules is disposed within each loop channel.

56. A microfluidic device according to claim 55 wherein the target molecules are patterned on a substrate that seals at least one portion of the length of each loop channel.

57. A microfluidic device according to claim 56, wherein the substrate is a microtiter plate having microtiter wells, each microtiter well having a target molecule patterned thereon;

and the microtiter plate is connected to the treatment layer so that at least a portion of the length of each loop channel is sealed by a microtiter well.

58. A microfluidic device according to claim 57, wherein the microtiter plate comprises 96 microtiter wells.

59. A microfluidic device according to claim 57, wherein the microtiter plate comprises 384 microtiter wells.

60. A microfluidic device according to claim 57 wherein the microtiter plate comprises 1536 microtiter wells.