Methods for providing extended dynamic range in analyte assays

• US 7,361,472 B2
• Filed: 02/25/2002
• Issued: 04/22/2008
• Est. Priority Date: 02/23/2001
• Status: Expired due to Fees

• Current Assignee: Life Technologies Corporation (Thermo Fisher Scientific Incorporated)
• Original Assignee: Invitrogen Corp. (Thermo Fisher Scientific Incorporated)
• Inventors: Warden, Laurence, Peterson, Todd, Yguerabide, Juan, Yguerabide, Evangelina
• Primary Examiner(s): Le; Long V.
• Assistant Examiner(s): Yu; Melanie J.
• Application Number:
  US10/084,844
• Publication Number:
  US 20030096302A1
• Time in Patent Office: 2,248 Days
• Field of Search: 435/4, 435/7.1, 435/6, 435/283.1, 435/288.7, 435/288.4, 435/288.3, 435/305.1, 356/300, 356/341, 356/342, 356/337, 422/50, 422/55, 422/61, 422/68.1, 436/501, 436/518, 436/164
• US Class Current: 435/7.1
• CPC Class Codes: C12Q 1/6816 characterised by the detection means C12Q1/6804 takes precedence
• CPC Class Codes: C12Q 2563/137 Metal/ion, e.g. metal label
• CPC Class Codes: C12Q 2565/501 being an array of oligonucleotides
• CPC Class Codes: G01N 15/1468 with spatial resolution of the texture or inner structure of the particle
• CPC Class Codes: G01N 2021/6439 with indicators, stains, dyes, tags, labels, marks
• CPC Class Codes: G01N 21/47 Scattering, i.e. diffuse reflection G01N21/25, G01N21/41 take precedence G01N21/55 takes precedence

Abstract

Methods for enhancing the dynamic range for specific detection of one or more analytes in assays using scattered-light detectable particle labels. The methods involve utilizing variations in detection technique and/or signal processing to extend the dynamic range to either or both of lower and higher concentrations.

Claims

1. A method for providing an extended dynamic range in an analyte assay that uses scattered light from light scattering particles at one or more assay sites as signals, said method comprising:

(a) detecting a first set of integrated scattered light intensity signals from light scattering particles at one or more assay sites with a sensor having a dynamic range, wherein the integrated scattered light intensity signal collected from at least one assay site exceeds the dynamic range of the senor;

(b) applying at least one optical filter having an optical density to provide a reduced-intensity integrated scattered light signal that does not exceed the dynamic range of the sensor, said reduced intensity scattered light signal is from the at least one of said one or more assay sites in (a) that produced an integrated light scattering signal that exceeded the dynamic range of the sensor;

(c) detecting a second set of integrated scattered light intensity signals from the light scattering particles at said one or more assay sites in (a) with the sensor, said second set comprising the reduced-intensity integrated scattered light signals of step (b);

(d) converting the reduced-intensity integrated scattered light signals in (c) to a scaled signal using a predetermined conversion factor related to the optical density of the optical filter; and

(e) combining the scaled signal with the first set of integrated scattered light intensity signals to provide an extended dynamic range.

2. The method of claim 1, wherein the conversion factor is determined from a transmission curve for the filter based on the measurements of transmission of light from a white light source through the filter.

3. The method of claim 2, wherein the transmission curve for the filter is wavelength-dependent.

4. The method of claim 1, wherein converting the one or more reduced-intensity signals in (c) to one or more scaled signals comprises the step of multiplying the one or more reduced intensity signals by the conversion factor of the at least one filter.

5. The method of claim 1, wherein the at least one filter is selected from the group consisting of longpass filters, shortpass filters, bandpass interference filters, filter wheels, neutral density filters, color filters, notch filters, super notch filters, supemotch plus filters, and filter monochrometers.

6. The method of claim 1, wherein an amount of light transmitted by the at least one filter is selected from the group consisting of 1%, 3.2%, 6.3%, 10%, 13%, 16%, 20%, 25%, 32%, 40%, 50%, 63%, 70%, and 80% of the light entering the filter.

7. The method of claim 1, wherein the integrated scattered light intensity signals from the light scattering particles comprise light scattered by the light scattering particles, light emitted by fluorescent entities on the light scattering particles, or both.

8. The method of claim 1, wherein the extended dynamic range comprises integrated scattered light intensity signals quantified over at least four, five, six, or seven orders of magnitude.

9. The method of claim 1, wherein the dynamic range is extended by at least one order of magnitude over the dynamic range of an assay without the extension of dynamic range and the extended dynamic range is linear.

10. The method of claim 1, further comprising the step of:

(f) forming an image of one or more of the one or more assay sites with the combined scaled signal and first set of integrated scattered light intensity signals from step (e).

11. The method of claim 10, wherein forming the image comprises the steps of identifying background portions of the image, and removing signals corresponding to the background portions of the image.

12. The method of claim 1, wherein the sensor is selected from the group consisting of a camera, a photographic film, a video camera, a charged-coupled device, a charged injection device, a photodiode, a photodiode array, and a photomultiplier tube.

13. The method of claim 1, wherein said at least one or more assay sites are separately addressable assay sites.

14. The method of claim 1, wherein said at least one or more assay sites are associated with a physical form selected from the group consisting of a slide, a membrane, a filter, a test tube, a vial, a microtiter plate, a microarray, a small volume device, and a gel.

15. The method of claim 1, wherein said at least one or more assay sites are present in a sample selected from the group consisting of a tissue, a tissue section, a cell culture, a cell, a cell organelle, a chromosome preparation, and a chromosome.

16. The method of claim 1, further comprising, after step (c) repeating:

applying at least one optical filter having an optical density that is different than the at least one optical filter in step (b) to provide a second reduced-intensity integrated scattered light signal that does not exceed the dynamic range of the sensor, said second reduced-intensity scattered light signal is from at least one of said at least one assay site that produced an integrated light scattering signal that exceeded the dynamic range of the sensor; and

detecting a third set of integrated scattered light intensity signals from the light scattering particles at said one or more assay sites with the sensor, said third set comprising the second reduced-intensity integrated scattered light signals of the repeated step (c).