System for rapid nucleic acid amplification and detection

• US 7,466,908 B1
• Filed: 04/15/2005
• Issued: 12/16/2008
• Est. Priority Date: 04/16/2004
• Status: Active Grant

• Current Assignee: Genomadix Incorporated
• Original Assignee: Spartan Bioscience, Inc.
• Inventors: Lem, Paul, Spiegelman, Jamie, Lem, John
• Primary Examiner(s): Campbell; Thor S
• Application Number:
  US11/578,440
• Time in Patent Office: 1,341 Days
• Field of Search: None
• US Class Current: 392/443
• CPC Class Codes: B01L 2300/1827 using resistive heater
• CPC Class Codes: B01L 7/525 with physical movement of samples between temperature zones
• CPC Class Codes: B01L 9/06 Test-tube stands; Test-tube holders
• CPC Class Codes: G01N 21/272 for following a reaction, e.g. for determining photometrically a reaction rate (photometric cinetic analysis)
• CPC Class Codes: G01N 21/6428 Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" in vivo A61B5/00; immunoassay G01N33/53
• CPC Class Codes: G01N 21/6452 Individual samples arranged in a regular 2D-array, e.g. multiwell plates

Abstract

A temperature cycling system (10, 110) is provided for repeatedly heating and cooling a reaction mixture (16). The system (10, 110) includes a first heater (27) and a second heater (28) each movable between a first orientation in which the first or second heater (27, 28) affects the temperature of the reaction mixture (16) and a second orientation in which the first or second heater (27, 28) does not substantially affect the temperature of the reaction mixture (16). During temperature cycling, the second heater (28) is in the second orientation when the first heater (27) is in the first orientation, and the second heater (28) is in the first orientation when the first heater (27) is in the second orientation.

Claims

1. A device for thermal cycling of a reaction mixture contained within a reaction vessel, said vessel including a side wall, said device comprising:

(a) at least two heating blocks in spaced apart generally opposing relation, each of said blocks including a substantially vertical wall, said walls each including at least one generally vertical groove recessed therein open towards the opposing grooved wall of said blocks to receive said at least one vessel such that said vessel may be placed into said groove with said groove only partly surrounding said sidewall with the remainder of said sidewall being exposed to ambient conditions;

(b) a holder for holding said reaction vessel between said blocks, said holder for retaining said vessel such that when engaged within one of said grooves the exposed portion of said sidewall is exposed to ambient conditions;

(c) means for maintaining said at least two heating blocks at set temperatures different from each other, for carrying out a thermal cycling chemical reaction;

(d) drive means for imparting relative motion between said vessel and said blocks such that generally opposing sides of said vessel sequentially contact said heating blocks, such that said vessel is partially enclosed within a selected one of said grooves when in contact with each said block, and laterally displaceable between said grooves, wherein said motion comprises a linear and unidirectional horizontal path followed by said vessel relative to said blocks.

2. The device of claim 1 wherein said holder retains said vessel such that said vessel depends downwardly from said holder and the sidewall of said reaction vessel is substantially fully exposed when held by said holder.

3. The device of claim 1, wherein said at least two heating blocks each include a plurality of said grooves in spaced parallel relation to each other, and said sample holder includes means for holding a plurality of said reaction vessels.

4. The device of claim 1, wherein said holder includes at least one opening extending horizontally therethrough for suspending said at least one vessel with substantially all of its sidewall exposed, and said drive means is for displacing said holder along a path between said blocks.

5. The device of claim 1, comprising only two heating blocks in spaced opposing relation to each other, wherein said grooves directly oppose each other.

6. The device of claim 1, further comprising temperature sensing means for sensing the temperature within said reaction vessels, and temperature control means for increasing or decreasing the temperature of at least one of said blocks in response to the temperature sensed by said sensing means.

7. The device of claim 6, wherein said temperature sensing means comprises thermostat wiring in each heating block, each wiring being at least partially positioned within the heating block and sufficiently close to said groove to detect temperature of said reaction vessel.

8. The device of claim 1, wherein said grooves are dimensioned to contact between about 40% and 50% of the side wall of said reaction vessel.

9. The device of claim 1, wherein said blocks are stationary and said drive means is for moving said reaction vessels in a linear motion between said blocks.

10. The device of claim 1, further comprising a controller for controlling operation of the device.

11. The device of claim 1, wherein said drive means comprises an arm extending between said blocks, said arm including openings for releasably holding said reaction vessels wherein said vessels depend from said arm, said arm having a sleeve, a rotatable shaft, a threaded shaft, and means for rotatably driving said shaft, said arm including a sleeve having means to engage the threading of said shaft wherein rotation of said shaft causes displacement of said arm along said shaft, and means to selectively reverse direction of rotation of said shaft, wherein rotation in a first direction causes linear movement of said arm towards a first of said block, and rotation of such shaft in a second direction causes linear movement of said arm towards a second of said blocks.

12. The device of claim 1, further comprising monitoring means for monitoring of nucleic acid amplification product formation within said at least one reaction vessel, said reaction vessel having a translucent side wall, said monitoring means comprising:

at least one visible light source for illuminating a volume of the mixture;

at least one first optical filter for restricting the wavelength of light entering the mixture from the light source;

at least one second optical filter for restricting the wavelength of a fluorescent signal emitted from the mixture; and

a detection and analysis means for receiving the fluorescent signal at any time point before, during, or after a nucleic acid amplification, the detection and analysis means measuring the intensities of the fluorescent signal at a predetermined time point, producing a plurality of corrected intensity signals, each corrected intensity signal corresponding to a relationship between the intensities of the fluorescent signal at a predetermined time point and before the nucleic acid amplification.

13. The device of claim 12, wherein the detection and analysis means provides a readout corresponding to the plurality of corrected intensity signals as a function of time.

14. The device of claim 12, wherein the reaction vessel includes an optical interface through which light from the light source is transmittable into the mixture.

15. The device of claim 14, wherein the optical interface forms a wall of the reaction vessel that covers at least a portion of the mixture and which is separated from the sample by an air gap.

16. The device of claim 1 further comprising at least one reaction vessel comprising a plastic microtube.

17. The device according to claim 12 wherein said at least one reaction vessel comprises a plurality of reaction vessels, said at least one light source comprises a plurality of light sources and said at least one first and second optical filters comprise a plurality of first and second optical filters, and further comprising a multiplexer that couples the detection and analysis means to the light sources.