Method for determining an analyte

• US 7,700,371 B2
• Filed: 05/31/2002
• Issued: 04/20/2010
• Est. Priority Date: 06/01/2001
• Status: Expired due to Fees

• Current Assignee: Arrowhead Research Corporation
• Original Assignee: Arrowhead Research Corporation
• Inventors: Albrecht, Christian, Spinnler, Katrin, Blank, Kerstin, Gilbert, Ilka, Steipe, Boris, Mai, Thao, Brink, Gunnar, Oesterhelt, Filipp, Gaub, Hermann
• Primary Examiner(s): Yu; Melanie J.
• Application Number:
  US10/479,249
• Publication Number:
  US 20050084855A1
• Time in Patent Office: 2,881 Days
• Field of Search: 436/518, 436/524, 436/528, 436/535, 435/287.1, 435/287.2, 435/288.3, 435/288.4, 435/288.7, 422/50, 422/55, 422/57, 422/61, 422/68.1
• US Class Current: 436/518
• CPC Class Codes: C12Q 1/6837 using probe arrays or probe chips C12Q1/6874 takes precedence
• CPC Class Codes: C12Q 2565/515 characterised by the interaction between or sequential use of two or more arrays
• CPC Class Codes: G01N 33/543 with an insoluble carrier for immobilising immunochemicals
• CPC Class Codes: G01N 33/54366 Apparatus specially adapted for solid-phase testing

Abstract

The present invention relates to a method for determining an analyte in a sample. According to the method of the present invention, a probe is transferred from a stamp member onto an analyte that is bound to a support member. The present invention is particularly suitable for microarrays.

Claims

1. A method for determining an analyte in a sample, the method comprising:

contacting a sample that might contain the analyte being determined with a first surface so that the analyte possibly contained in the sample is bound to the first surface;

bringing a second surface to which a probe that can bind the analyte is bound close to the first surface-so that a probe comprising a marker and the analyte can interact, the binding of the probe to the analyte and the binding of the analyte to the first surface being more stable under an externally applied tensile force than the binding of the probe to the second surface;

separating the second surface and the first surface from each other; and

determining whether the probe comprising a marker is bound to the first surface and/or how much probe is bound to the second surface.

2. The method according to claim 1, characterized in that a receptor that can bind the analyte is immobilized on the first surface, the binding of the analyte to the receptor being more stable under the externally applied tensile force than the binding of the probe to the second surface.

3. The method according to claim 2, characterized in that the receptors and/or probes are selected from the group consisting of:

polyclonal antibodies, monoclonal antibodies, antibody fragments, and antibody derivatives that can recognize and bind the analyte.

4. The method according to claim 3, characterized in that the receptors and/or probes used are antibody fragments or derivatives selected from the group consisting of:

Fv-, Fab-, Fab′

- or F(ab′

)₂ fragments, single-chain antibody fragments, bispecific antibodies, chimenc antibodies, humanized antibodies and fragments containing complementarity determining regions that recognize an epitope of the analyte.

5. The method according to claim 1 or claim 2, characterized in that the receptors and/or probes are selected from the group consisting of:

nucleic acids, synthetic nucleic acids, and three-dimensional structures thereof.

6. The method according to any of claims 1-4, characterized in that the analyte is selected from the group consisting of:

proteins, polypeptides, peptides, nucleic acids, modified nucleic acids, peptide nucleic acids, locked nucleic acids, three-dimensional nucleic acid structures, aptamers, carbohydrates, and modified variants thereof.

7. The method according to claim 6, characterized in that the analyte is a protein, polypeptide or a peptide.

8. The method according to any of claims 1-4, characterized in that the probe binds specifically to the analyte.

9. The method according to any of claims 1-4, characterized in that the probe is selected from the group consisting of:

antibodies, antibody fragments and antibody derivatives.

10. The method according to claim 1, characterized in that the probe is immobilized at the second surface by a sensor complex.

11. The method according to claim 10, characterized in that the sensor complex comprises a first binding partner that is bound to the second surface and a second binding partner that is bound fixedly to the probe, wherein the first binding partner and the second binding partner can bind non-covalently to each other.

12. The method according to claim 10, characterized in that the first binding partner and the second binding partner are nucleic acids.

13. The method according to claim 12, characterized in that the first binding partner and the second binding partner are selected from the group consisting of:

single-stranded DNA, single-stranded RNA, and combinations thereof.

14. The method according to claim 13, characterized in that the 5′

end of the first binding partner is bound to the second surface and the 3′

end of the second binding partner is bound to the probe, or that the 3′

end of the first binding partner is bound to the second surface and the 5′

end of the second binding partner is bound to the probe.

15. The method according to any of claims 1-4 or 10-14, characterized in that the second surface comprises a plurality of areas separated from each other, in which probes with different specificity for different analytes are bound.

16. The method according to any of claims 2-4 or 10-14, characterized in that the support member comprises a plurality of areas separated from each other, in which receptors with different specificity for different analytes are bound.

17. The method according to claim 15, characterized in that the first surface has a plurality of areas separated from each other, in which receptors with different specificity for different analytes are bound in such a way that they are disposed symmetrically to the areas on the second surface, so that when the second surface and the support member approach each other, the areas on the probes and receptors that have specificity for the same analyte become aligned.

18. The method according to claim 15, characterized in that both the first surface and the second surface have areas in which receptors are immobilized, as well as areas in which probes are immobilized, the respective areas being so arranged that when the second surface and the first surface are brought into contact, areas with receptors for an analyte and areas with probes for the same analyte are positioned facing each other.

19. The method according to any of claims 1-4 or 10-14, characterized in that the second surface and/or first surface have sub-areas on which a plurality of spots are arranged.

20. The method according to claim 19, characterized in that the second surface and/or first surface-have sub-areas with a plurality of spots, the spots on a sub-area each having different receptors or probes that can bind to an analyte.

21. The method according to claim 19, characterized in that the second surface and/or the first surface-have at least one spot where receptors capable of binding directly with the probe are immobilized, said spots being used to monitor coupling.