System for cell-based screening

• US 7,853,409 B2
• Filed: 06/04/2007
• Issued: 12/14/2010
• Est. Priority Date: 02/27/1997
• Status: Expired due to Fees

• Current Assignee: Cellomics Incorporated (Thermo Fisher Scientific Incorporated)
• Original Assignee: Cellomics Incorporated (Thermo Fisher Scientific Incorporated)
• Inventors: Taylor, D. Lansing, Dunlay, R. Terry
• Primary Examiner(s): BORIN, MICHAEL L
• Application Number:
  US11/809,937
• Publication Number:
  US 20080040044A1
• Time in Patent Office: 1,289 Days
• Field of Search: None
• US Class Current: 702/19
• CPC Class Codes: B01J 2219/00315 Microtiter plates
• CPC Class Codes: B01J 2219/00317 Microwell devices, i.e. having large numbers of wells
• CPC Class Codes: B01J 2219/00707 separated from the reactor apparatus
• CPC Class Codes: B01J 2219/00743 Cells
• CPC Class Codes: B01L 3/5085 for multiple samples, e.g. microtitration plates
• CPC Class Codes: B82Y 30/00 Nanotechnology for materials or surface science, e.g. nanocomposites
• CPC Class Codes: C12Q 1/68 involving nucleic acids
• CPC Class Codes: C12Q 1/6813 Hybridisation assays
• CPC Class Codes: C12Q 2525/179 incorporating arbitrary or random nucleotide sequences
• CPC Class Codes: C40B 60/14 for creating libraries
• CPC Class Codes: G01N 15/1433 using image recognition
• CPC Class Codes: G01N 2015/1486 Counting the particles
• CPC Class Codes: G01N 2015/1497 Particle shape
• CPC Class Codes: G01N 2021/6419 Excitation at two or more wavelengths
• CPC Class Codes: G01N 2021/6482 Sample cells, cuvettes
• CPC Class Codes: G01N 21/6428 Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" in vivo A61B5/00; immunoassay G01N33/53
• CPC Class Codes: G01N 21/6452 Individual samples arranged in a regular 2D-array, e.g. multiwell plates
• CPC Class Codes: G01N 21/6458 Fluorescence microscopy fluorescence microscopes per se G02B21/0076 and G02B21/16
• CPC Class Codes: G01N 33/5005 involving human or animal cells immunoassay G01N33/56966; immunoassays of protozoa G01N33/56905; protozoa in screening assays C12Q1/025
• CPC Class Codes: G01N 33/5035 on sub-cellular localization
• CPC Class Codes: G01N 33/582 : with fluorescent label
• CPC Class Codes: G02B 21/16 : adapted for ultraviolet illumination ; Fluorescence microscopes G02B21/0076 takes precedence
• CPC Class Codes: G02B 21/365 : Control or image processing arrangements for digital or video microscopes G02B21/361, G02B21/362 take precedence
• CPC Class Codes: Y10S 436/80 : Fluorescent dyes, e.g. rhodamine
• CPC Class Codes: Y10S 436/807 : Apparatus included in process claim, e.g. physical support structures
• CPC Class Codes: Y10S 436/809 : Multifield plates or multicontainer arrays
• CPC Class Codes: Y10S 977/795 : Composed of biological material
• CPC Class Codes: Y10S 977/881 : Microscopy or spectroscopy, e.g. sem, tem
• CPC Class Codes: Y10S 977/92 : Detection of biochemical
• CPC Class Codes: Y10S 977/941 : including dna logic element
• CPC Class Codes: Y10S 977/942 : including protein logic element

Abstract

The invention relates to an optical system for determining the distribution, environment, or activity of fluorescently labeled reporter molecules in cells for the purpose of screening large numbers of compounds for specific biological activity. The invention involves providing cells containing fluorescent reporter molecules in an array of locations and scanning numerous cells in each location with a fluorescent microscope, converting the optical information into digital data, and utilizing the digital data to determine the distribution, environment or activity of the fluorescently labeled reporter molecules in the cells. The array of locations may be an industry standard 96 well or 384 well microtiter plate or a microplate which is a microplate having a cells in a micropatterned array of locations. The invention includes apparatus and computerized method for processing, displaying and storing the data.

Claims

1. A non-transitory machine readable storage medium comprising a program containing a set of instructions when executed cause a cell screening system to execute procedures for detecting translocation of a cellular component of interest between a first cellular compartment and a second cellular compartment on and/or within cells, wherein the procedures comprise:

a) providing an array of locations that contain multiple cells, wherein the cells contain a plurality of fluorescent reporter molecules, wherein the plurality of fluorescent reporter molecules comprises optically distinguishable fluorescent reporter molecules that report on;

i) individual cells;

ii) the first cellular compartment;

iii) the second cellular compartment; and

iv) a cellular component of interest;

wherein the fluorescent reporter molecules that report on the cellular component of interest are optically distinguishable from the fluorescent reporter molecules that report on individual cells, the first cellular compartment, and the second cellular compartment;

b) automatically scanning multiple cells in each of the locations containing cells to obtain fluorescent signals from the plurality of fluorescent reporter molecules;

c) automatically identifying cells from the fluorescent signals;

d) automatically defining a first cellular compartment mask and a second cellular compartment mask in the cells from the fluorescent signals;

e) automatically determining an intensity of the fluorescent signals from the fluorescent reporter molecules that report on the cellular component of interest; and

f) automatically determining one or both of the following;

i) a ratio of the intensity of the fluorescent signals from the fluorescent reporter molecules that report on the cellular component of interest in the first cellular compartment mask and the second cellular compartment mask; and

ii) a difference of the intensity of the fluorescent signals from the fluorescent reporter molecules that report on the cellular component of interest in the first cellular compartment mask and the second cellular compartment mask;

wherein the ratio of the intensity of the fluorescent signals from the fluorescent reporter molecules that report on the cellular component of interest in the first cellular compartment mask and the second cellular compartment mask and/or the difference of the intensity of the fluorescent signals from the fluorescent reporter molecules that report on the cellular component of interest in the first cellular compartment mask and the second cellular compartment mask provides a measure of the translocation of the cellular component of interest between the first cellular compartment and the second cellular compartment on and/or within the cells.

2. The machine readable storage medium of claim 1, wherein the ratio of the intensity of the fluorescent signals from the fluorescent reporter molecules that report on the cellular component of interest in the first cellular compartment mask and the second cellular compartment mask and/or the difference of the intensity of the fluorescent signals from the fluorescent reporter molecules that report on the cellular component of interest in the first cellular compartment mask and the second cellular compartment mask provides a measure of test compound-induced translocation of the cellular component of interest between the different cellular compartments on and/or within the cells.

3. The machine readable storage medium of claim 1, wherein the first cellular compartment and the second cellular compartment consist of a cell nucleus and a cell cytoplasm, and wherein the translocation consists of a translocation between the cell cytoplasm and the cell nucleus.

4. The machine readable storage medium of claim 1 wherein the first cellular compartment and the second cellular compartment consist of a cell cytoplasm and a cell membrane, and wherein the translocation consists of a translocation between the cell cytoplasm and the cell membrane.

5. The machine readable storage medium of claim 1, wherein the plurality of fluorescent reporter molecules comprise fluorescent reporter molecules expressed by the cells.

6. The machine readable storage medium of claim 1, wherein the plurality of fluorescent reporter molecules are expressed by the cells.

7. The machine readable storage medium of claim 1, wherein the plurality of fluorescent reporter molecules comprise fluorescent reporter molecules added to the cells.

8. The machine readable storage medium of claim 1, wherein the plurality of fluorescent reporter molecules are added to the cells.

9. The machine readable storage medium of claim 1 wherein the plurality of fluorescent reporter molecules comprise antibodies.

10. The machine readable storage medium of claim 1 wherein the plurality of fluorescent reporter molecules comprise compounds that report on DNA.

11. The machine readable storage medium of claim 1 wherein the cellular component of interest comprises a protein.

12. The machine readable storage medium of claim 11 wherein the protein comprises a transcription factor.

13. The machine readable storage medium of claim 1 wherein steps (b) through (f) are performed at multiple time points.