Sets and compositions pertaining to analyte determination

• US 7,947,513 B2
• Filed: 02/12/2007
• Issued: 05/24/2011
• Est. Priority Date: 01/30/2003
• Status: Active Grant

• Current Assignee: DH Technologies Pte. Ltd.
• Original Assignee: DH Technologies PTD Limited
• Inventors: Bartlett-Jones, Michael, Pappin, Darryl J. C.
• Primary Examiner(s): Haq; Shafiqul
• Application Number:
  US11/673,809
• Publication Number:
  US 20070141659A1
• Time in Patent Office: 1,562 Days
• Field of Search: None
• US Class Current: 436/544
• CPC Class Codes: A61K 51/04 Organic compounds
• CPC Class Codes: C07D 207/46 with hetero atoms directly attached to the ring nitrogen atom
• CPC Class Codes: C07D 401/12 linked by a chain containing hetero atoms as chain links
• CPC Class Codes: G01N 2458/15 Non-radioactive isotope labels, e.g. for detection by mass spectrometry
• CPC Class Codes: G01N 33/532 Production of labelled immunochemicals
• CPC Class Codes: G01N 33/6842 Proteomic analysis of subsets of protein mixtures with reduced complexity, e.g. membrane proteins, phosphoproteins, organelle proteins
• CPC Class Codes: G01N 33/6848 Methods of protein analysis involving mass spectrometry
• CPC Class Codes: Y10T 436/142222 Hetero-O [e.g., ascorbic acid, etc.]
• CPC Class Codes: Y10T 436/145555 Hetero-N
• CPC Class Codes: Y10T 436/147777 Plural nitrogen in the same ring [e.g., barbituates, creatinine, etc.]
• CPC Class Codes: Y10T 436/24 Nuclear magnetic resonance, electron spin resonance or other spin effects or mass spectrometry

Abstract

This invention pertains to methods, kits and/or compositions for the determination of analytes by mass analysis using unique labeling reagents or sets of unique labeling reagents. The labeling reagents can be isomeric or isobaric and can be used to produce mixtures suitable for multiplex analysis of the labeled analytes.

Claims

1. A set of two or more reagent compounds, or a salt thereof, each of the formula RP-X-LK-Y-RG, wherein:

i) RG is a reactive group that is a nucleophile or an electrophile and that is capable of reacting with a functional group of one or more reactive analytes of a sample;

ii) RP is a reporter moiety that comprises a fixed charge or that is ionizable, wherein the gross mass of each reporter moiety is different for each reagent compound of the set;

iii) LK is a linker moiety that links the reactive group to the reporter moiety, wherein the mass of the linker compensates for the difference in gross mass between the reporter moieties for the different reagent compounds of the set such that the aggregate gross mass of the reporter and linker combination is the same for each reagent compound of the set;

iv) X is a bond between an atom of the reporter moiety and an atom of the linker moiety;

v) Y is a bond between an atom of the linker moiety and an atom of the reactive group, wherein, once the reagent compound is reacted with the reactive analyte, bond Y links the linker to the analyte; and

vi) bonds X and Y are configured to fragment to form a labeled analyte when subjected to dissociative energy levels;

wherein the reporter moiety, RP, of each of the reagent compounds is independently a substituted or unsubstituted morpholine, or a substituted or unsubstituted piperazine, the nitrogen atom of the morpholine or a nitrogen atom of the piperazine is N-alkylated with a substituted or unsubstituted acetic acid moiety, the acetic acid moiety represents X-LK-Y, and the carbonyl group of the acetic acid moiety is linked to the reactive group, RG, to which the analyte can be linked, by reaction of the reactive group, RG, with the functional group of the analyte, and each of the two or more reagent compounds independently comprises one or more heavy atom isotopes.

2. The compound set of claim 1, wherein the reporter moiety, RP:

i) has a gross mass of less than 250 daltons; and

/or

ii) does not substantially sub-fragment under conditions of dissociative energy applied to cause fragmentation of at least a portion of both bonds X and Y of a labeled analyte in a mass spectrometer; and

/or

iii) is not a polymer or is not a biological polymer.

3. The compound set of claim 1, wherein the linker moiety, LK, undergoes neutral loss under conditions of applied dissociative energy.

4. The compound set of claim 1, wherein under conditions of dissociative energy applied in a mass spectrometer, the fragmentation of one of bonds X or Y of the reagent compounds results in the fragmentation of the other of bonds X or Y.

5. The compound set of claim 1, wherein:

i) under conditions of dissociative energy applied in a mass spectrometer, bond X of the reagent compounds is less prone to fragmentation as compared with bond Y; and

/or

ii) under conditions of dissociative energy applied in a mass spectrometer, bond X of the reagents is less prone to fragmentation as compared with the peptide bond of a Z″

-pro amino acid dimer or Z″

-asp amino acid dimer, wherein Z″

is any natural amino acid, pro is proline and asp is aspartic acid.

6. The compound set of claim 1, wherein compounds of the set are isotopically enriched with two or more heavy atom isotopes.

7. The compound set of claim 1, wherein compounds of the set are isotopically enriched with three or more heavy atom isotopes.

8. The compound set of claim 1, wherein the reactive group is an active ester.

9. The compound set of claim 1, wherein the reactive group is a mixed anhydride.

10. The compound set of claim 1, wherein each reagent compound is in its salt form as a mono-TFA salt, a mono-HCl salt, a bis-TFA salt or a bis-HCl salt.

11. The compound set of claim 1, wherein each incorporated heavy atom isotope of each reagent compound is present in at least 80 percent isotopic purity.

12. The compound set of claim 1, wherein each incorporated heavy atom isotope of each reagent compound is present in at least 93 percent isotopic purity.

13. The compound set of claim 1, wherein each incorporated heavy atom isotope of each reagent compound is present in at least 96 percent isotopic purity.

14. A reagent compound of formula RP-X-LK-Y-RG, or a salt thereof, wherein:

i) RG is a reactive group that is a nucleophile or an electrophile and that is capable of reacting with a functional group of one or more reactive analytes of a sample;

ii) RP is a reporter moiety that comprises a fixed charge or that is ionizable;

iii) LK is a linker moiety that links the reactive group to the reporter moiety;

iv) X is a bond between an atom of the reporter moiety and an atom of the linker moiety;

v) Y is a bond between an atom of the linker moiety and an atom of the reactive group, wherein, once the reagent compound is reacted with the reactive analyte, bond Y links the linker to the analyte; and

vi) bonds X and Y are configured to fragment to form a labeled analyte upon reacting the compound of formula RP-X-LK-Y-RG with a sample comprising one or more reactive analytes to form a product and subjecting the product to dissociative energy levels;

wherein, the linker moiety of the compound is isotopically enriched with at least one heavy atom isotope and the reporter moiety of the compound is isotopically enriched with at least one heavy atom isotope;

wherein the reporter moiety, RP, is a substituted or unsubstituted morpholine, or substituted or unsubstituted piperazine, the nitrogen atom of the morpholine or a nitrogen atom of the piperazine is N-alkylated with a substituted or unsubstituted acetic acid moiety, the acetic acid moiety represents X-LK-Y, and the carbonyl group of the acetic acid moiety is linked to the reactive group, RG, to which the analyte can be linked, by reaction of the reactive group, RG, with the functional group of the analyte.

15. The reagent compound of claim 14, wherein the linker moiety is capable of undergoing neutral loss when the reagent compound is subjected to dissociative energy.