Biomolecule immobilization on biosensors

• US 7,989,396 B2
• Filed: 12/03/2007
• Issued: 08/02/2011
• Est. Priority Date: 12/05/2006
• Status: Expired due to Fees

• Current Assignee: Board of Trustees of the Leland Stanford Junior University (Stanford University)
• Original Assignee: Board of Trustees of the Leland Stanford Junior University (Stanford University)
• Inventors: Yu, Heng, Wang, Shan X., Pourmand, Nader
• Primary Examiner(s): Steele; Amber D.
• Application Number:
  US11/949,442
• Publication Number:
  US 20080161200A1
• Time in Patent Office: 1,338 Days
• Field of Search: 506/32, 506/34
• US Class Current: 506/32
• CPC Class Codes: C40B 40/08 Libraries containing RNA or DNA which encodes proteins, e.g. gene libraries
• CPC Class Codes: C40B 40/10 Libraries containing peptides or polypeptides, or derivatives thereof
• CPC Class Codes: C40B 50/18 using a particular method of attachment to the solid support
• CPC Class Codes: C40B 60/12 for screening libraries
• CPC Class Codes: G01N 33/54353 with ligand attached to the carrier via a chemical coupling agent coatings G01N33/54393

Abstract

A highly specific and versatile surface chemistry for immobilization of amine-terminated probes is disclosed. A bi-layered polymer thin film serves as the platform for coupling the probes, which are preferably oligonucleotides. The process involves sequentially coating a substrate with polyamine and polyacid anhydride. Hydrolyzed polyacid anhydride groups may be converted to non-hydrolyzed groups at about 100° C. prior to probe attachment. The process of coating the substrate requires no harsh chemical pretreatment of substrates such as RCA or Piranha cleaning. In addition, simple thermal activation of the anhydride groups has a low requirement for storage, leading to a long shelf life of modified surfaces. The disclosed surface chemistry is especially compatible with microfabrication processes, and its effective application to magnetic biosensors is demonstrated.

Claims

1. A method for preparing a substrate for use in a biosensor, comprising:

(a) providing a substrate surface which is reactive with an amine;

(b) coating the substrate surface with a polyamine to form a polyamine covalently linked to the substrate;

then

(c) coating the polyamine covalently linked to the substrate with a polyacid anhydride having multiple acid anhydride groups to thereby form a layer of polyacid anhydride that binds to the polyamine covalently linked to the substrate with one portion of the multiple acid anhydride groups and retains another portion of the multiple acid anhydride groups for linking to amine groups on biomolecules, said polyacid anhydride coating comprising an at least partially hydrolyzed polyacid;

then

(d) dehydrating partially hydrolyzed polyacid to form a corresponding polyanhydride for linking to said amine groups on biomolecules.

2. The method of claim 1 where the substrate surface, which is reactive with an amine, comprises oxide groups.

3. The method of claim 2 where the oxide groups are selected from the group consisting of SiO₂, Al₂O₃, Ta₂O₅, and TiO₂.

4. The method of claim 1 where the substrate surface, which is reactive with an amine, comprises sulfide groups.

5. The method of claim 1 where the polyamine coating the substrate surface is a primary amine.

6. The method of claim 1 where the polyamine coating the substrate surface is selected from the group consisting of (3-aminopropyl)trimethoxysilane (APTMS) and N-(2- aminoethyl)-3-aminopropyl trimethoxysilane (EDA).

7. The method of claim 1 where the polyamine coating the substrate surface is a polyallylamine.

8. The method of claim 1 where the polyamine is selected from the group consisting of PEI (poly(ethyleneimine), PAAm (polyallylamine) and poly-L-lysine (PLL).

9. The method of claim 1 where the polyacid anhydride is a copolymer of a dicarboxylic acid anhydride and a monomer selected from the group consisting of ethylene, propylene, butene, butadiene, styrene, 1-octadecene and 1-tetradecene.

10. The method of claim 9 where the dicarboxylic acid anhydride is selected from the group consisting of fumaric acid, itaconic acid, maleic acid, maleic anhydride, chloromaleic acid, dimethyl fumarate, chloromaleic anhydride, and mixtures thereof.

11. The method of claim 1 where the polyacid anhydride comprises polyethylene and maleic acid.

12. The method of claim 1 where the polyacid anhydride is added in an aqueous solvent.

13. The method of claim 1 wherein the substrate surface is an oxide surface on silicon.

14. The method of claim 13 further comprising the step of patterning the substrate to expose a first portion of said polyamine covalently linked to the substrate that is contacted with said polyacid anhydride and to provide a second portion of said polyamine covalently linked to the substrate that is not contacted with said polyacid anhydride.

15. A method of preparing a biosensor, comprising the steps of:

providing a substrate prepared in accordance with steps (a) through (d) of claim 1;

then

reacting the bonded polyacid anhydride with an amino-terminated biomolecule to link the biomolecule to the substrate.

16. The method of claim 15 further comprising the step of heating the substrate prior to reacting the bonded polyacid anhydride with the amino-terminated biomolecule.

17. The method of claim 15 where the biomolecule is selected from the group consisting of a polypeptide, a polynucleic acid, and a small molecule drug.

18. The method of claim 15 where the biomolecule is a polynucleic acid.

19. A method for preparing a biosensor, comprising:

(a) providing a substrate having a surface reactive with a polyamine;

(b) coating the substrate surface with the polyamine to provide a bonded polyamine;

(c) forming multiple, physically discrete areas of exposed polyamine by patterning the substrate; and

(d) layering polyacid anhydride on the exposed bonded polyamine.

20. The method of claim 19 where the polyacid anhydride is partially hydrolyzed and further comprising the step of dehydrating the partially hydrolyzed polyacid anhydride to a corresponding polyanyhydride.

21. The method of claim 19 further comprising the step of reacting the polyacid anhydride with a plurality of different species of amino-terminated biomolecules, wherein the reacting causes different species of biomolecules to link to different physically discrete areas of the substrate.

22. A biosensor, comprising:

(a) a substrate;

(b) a polyamine layer on the substrate;

(c) a patterned layer on the polyamine layer which defines separate, discrete physical areas of exposed polyamine in the polyamine layer;

(d) a polyanhydride layer on each discrete physical area of the exposed polyamine in the polyamine layer; and

(e) a plurality of probe biomolecules attached to the polyanhydride layer through an amine group on the biomolecule, where the probe biomolecules are attached as different populations in each discrete physical area of the polyanhydride layer.

23. The biosensor of claim 22 where the substrate has magnetic properties.

24. The biosensor of claim 22 where the substrate comprises a magnetoresistive layer.

25. The biosensor of claim 24 further comprising electrical connections to discrete physical areas of the substrate for measuring changes in resistance due to binding of a magnetic target molecule to a probe biomolecule.

26. The biosensor of claim 25 further comprising instrumentation for measuring changes in resistance in each discrete physical area.