Methods and apparatuses for sorting objects in forensic DNA analysis and medical diagnostics

• US 7,998,676 B2
• Filed: 09/11/2008
• Issued: 08/16/2011
• Est. Priority Date: 09/13/2007
• Status: Expired due to Fees

• Current Assignee: Arryx, Inc. (Haemonetics Corporation)
• Original Assignee: Arryx, Inc. (Haemonetics Corporation)
• Inventors: Chakrabarty, Tania
• Primary Examiner(s): Babic; Christopher M.
• Application Number:
  US12/232,165
• Publication Number:
  US 20090075826A1
• Time in Patent Office: 1,069 Days
• Field of Search: None
• US Class Current: 435/6.12
• CPC Class Codes: B01L 2200/0652 Sorting or classification of particles or molecules
• CPC Class Codes: B01L 2300/0681 Filter
• CPC Class Codes: B01L 2300/0816 Cards, e.g. flat sample carriers usually with flow in two horizontal directions
• CPC Class Codes: B01L 2300/0864 comprising only one inlet and multiple receiving wells, e.g. for separation, splitting
• CPC Class Codes: B01L 2400/0454 radiation pressure, optical tweezers
• CPC Class Codes: B01L 3/502761 specially adapted for handling suspended solids or molecules independently from the bulk fluid flow, e.g. for trapping or sorting beads, for physically stretching molecules investigating characteristics of particles G01N15/00
• CPC Class Codes: B01L 7/52 with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples amplification or hybridisation processes per se C12Q1/68; controlling sequential reactions for synthesis B01J19/0046
• CPC Class Codes: G01N 2001/007 Devices specially adapted for forensic samples, e.g. tamper-proofing, sample tracking
• CPC Class Codes: G01N 35/00029 provided with flat sample substrates, e.g. slides G01N35/028 takes precedence

Abstract

The present invention relates to an apparatus and method of sorting objects and identifying the objects in a forensics sample, including using holographic optical trapping to sort objects from contaminants, and performing (single cell) PCR-based STR analysis on the objects to determine their identification. In addition, the chip used as a support for sorting the objects can also be used for performing single cell PCR-based STR analysis. In another embodiment, a microfluidics chip is used to stream the sample and sort the objects, before single cell PCR-based STR analysis is performed. The chip used for sorting utilizing HOT in the absence or presence of microfluidic streaming and sorting can also be the same as that used for the single cell PCR-based STR analysis.

Claims

1. A method of sorting objects and identifying the objects in a sample, comprising:

providing a holographic optical trapping apparatus;

providing a sample, said sample containing objects to be separated, in a fluidic stream in a microfluidics chip having an input chamber and a plurality of output chambers;

streaming said sample from said input chamber and through said microfluidics chip into said plurality of output chambers;

optically trapping said objects in said sample at said input chamber, using said holographic optical trapping apparatus;

sorting said optically trapped objects into wanted and unwanted objects;

individually removing said wanted objects into each of said plurality of output chambers such that each of said output chambers contains a single wanted object; and

performing single-cell PCR-based STR analysis downstream from said plurality of output chambers on each of said single wanted objects to determine an identification of each of said single wanted objects.

2. The method according to claim 1, wherein said sorting step, said performing step, and said PCR/STR analysis step, are performed on a single microfluidics chip.

3. The method according to claim 1, wherein the wanted objects are cells and the unwanted objects are contaminants.

4. The method according to claim 1, wherein the wanted objects are cancer cells and the unwanted objects are healthy cells, or vice versa.

5. The method according to claim 1, further comprising:

providing a filter at an outlet of said input chamber.

6. The method according to claim 5, further comprising:

providing valves at said input chamber to prevent backflow.

7. The method according to claim 1, wherein said sorting and PCR performing steps are automated and multiplexed.

15. The method according to claim 1, wherein said wanted objects are sperm cells.

17. The method according to claim 1, further comprising:

controlling the streaming of said sample such that no two objects from said sample occupy a same position in a channel or at a junction in said microfluidics chip.

18. The method according to claim 1, wherein said unwanted objects settle in said input chamber, and said wanted objects flow into said plurality of output chambers.

19. The method according to claim 1, wherein said wanted objects are streamed into a single output chamber prior to being streamed into said plurality of output chambers.

20. The method according to claim 1, wherein each of said single wanted objects flows from each of said individual output chambers to a corresponding individual lysis chamber where said PCR-based STR analysis is performed on each of said single wanted objects.

27. The method according to claim 1, wherein said microfluidics chip is optically transparent.

8. A method of sorting objects and identifying the objects in a sample, comprising:

providing a microfluidics chip having an input chamber and a plurality of output chambers;

providing a sample in a fluidic stream in said input chamber, said sample containing objects to be sorted;

streaming said sample from said input chamber and through said microfluidics chip into said plurality of output chambers;

sorting said objects using said microfluidics fluid stream, such that said objects are sorted into wanted and unwanted objects;

individually removing said wanted objects into each of said plurality of output, chambers, such that each of said output chambers contains a single wanted object; and

performing single-cell PCR-based STR analysis downstream from said plurality of output chambers on each of said single wanted objects to determine an identification of each of said wanted objects.

9. The method according to claim 8, wherein said sorting step, said performing step, and said PCR-based SIR analysis step, are performed on a single microfluidics chip.

10. The method according to claim 8, wherein the wanted objects are cells and the unwanted objects are contaminants.

11. The method according to claim 8, wherein the wanted objects are normal cells and the unwanted objects are cancerous cells, or vice versa.

12. The method according to claim 8, further comprising:

providing a filter at an outlet of said input chamber.

13. The method according to claim 12, further comprising:

providing valves at said input chamber to prevent backflow.

14. The method according to claim 8, wherein said sorting and PCR performing steps are automated and multiplexed.

16. The method according to claim 8, wherein said wanted objects are sperm cells.

21. The method according to claim 8, further comprising:

controlling the streaming of said sample such that no two objects from said sample occupy a same position in a channel or at a junction in said microfluidics chip.

22. The method according to claim 8, wherein said wanted objects are streamed into a single output chamber prior to being streamed into said individual output chambers.

23. The method according to claim 8, wherein said unwanted objects settle in said input chamber, and said wanted objects flow into said plurality of output chambers.

24. The method according to claim 8, wherein each of said single wanted objects flows from each of said individual output chambers to a corresponding individual lysis chamber where said PCR-based STR analysis is performed on each of said single wanted objects.

25. The method according to claim 8, further comprising:

a holographic optical trapping apparatus which optically traps and sorts said wanted objects from said unwanted objects at said input chamber.

26. The method according to claim 25, wherein said microfluidics chip is optically transparent.