Violet laser excitable dyes and their method of use

• US 8,158,801 B2
• Filed: 09/26/2006
• Issued: 04/17/2012
• Est. Priority Date: 09/26/2005
• Status: Active Grant

• Current Assignee: Life Technologies Corporation (Thermo Fisher Scientific Incorporated)
• Original Assignee: Life Technologies Corporation (Thermo Fisher Scientific Incorporated)
• Inventors: Buller, Gayle, Liu, Jixiang, Yue, Stephen T., Bradford, Jolene
• Primary Examiner(s): AULAKH, CHARANJIT
• Application Number:
  US11/535,458
• Publication Number:
  US 20070077549A1
• Time in Patent Office: 2,030 Days
• Field of Search: 546/271.4, 546/270.4, 546/152, 436/546, 435/4
• US Class Current: 546/271.4
• CPC Class Codes: C07D 409/04 directly linked by a ring-member-to-ring-member bond
• CPC Class Codes: C07D 413/04 directly linked by a ring-member-to-ring-member bond
• CPC Class Codes: C07D 413/14 containing three or more hetero rings
• CPC Class Codes: C07D 417/04 directly linked by a ring-member-to-ring-member bond
• CPC Class Codes: C09B 23/0075 the polymethine chain being part of an heterocyclic ring
• CPC Class Codes: G01N 2021/6441 with two or more labels
• CPC Class Codes: G01N 21/6486 Measuring fluorescence of biological material, e.g. DNA, RNA, cells G01N21/6428 takes precedence
• CPC Class Codes: G01N 33/52 Use of compounds or compositions for colorimetric, spectrophotometric or fluorometric investigation, e.g. use of reagent paper and including single- and multilayer analytical elements immunological elements G01N33/54386; involving labelled immunochemicals G01N33/58; for haemoglobin or occult blood G01N33/72
• CPC Class Codes: G01N 33/582 with fluorescent label

Abstract

The present invention provides dye compounds optimally excited at about 400 nm and have a Stokes shift of at least about 80 nm. These dyes find use in detection of analyte in a sample and the preparation of dye-conjugates.

Claims

1. A compound that is:

2. A method for detecting an analyte in a sample, wherein the method comprises:

a. combining a compound according to claim 1 with a sample to form a combined sample;

b. incubating the combined sample for a sufficient amount of time for the compound to associate with the analyte in the sample to form an incubated sample;

c. illuminating the incubated sample with an appropriate wavelength to form an illuminated sample; and

d. detecting the illuminated sample whereby the analyte in the sample is detected.

3. The method according to claim 2, wherein the illumination and/or detecting step comprises a flow cytometer.

4. A method for forming a dye conjugate, wherein the method comprises:

a. combining a compound according to claim 1 with a carrier molecule to form a combined sample; and

b. incubating the combined sample for a sufficient amount of time for the compound to form a covalent bond with the carrier molecule,

wherein the carrier molecule comprises an amino acid, a peptide, a protein, a polysaccharide, a nucleotide, a nucleoside, an oligonucleotide, a nucleic acid, a hapten, a psoralen, a drug, a hormone, a lipid, a lipid assembly, a synthetic polymer, a polymeric microparticle, a biological cell or a virus.

5. The method according to claim 4, further comprising separating un-conjugated compound from the compounds that formed a covalent bond with the carrier molecule.

6. A method for evaluating the viability of cells in a sample, comprising:

a. combining a compound according to claim 1 with a sample to form a combined sample;

b. incubating the combined sample for a sufficient amount of time for the compound to form a covalent bond with amine groups on a cell membrane of live cells and to form covalent bonds with amine groups inside dead cells in the sample to form an incubated sample;

c. illuminating the incubated sample with an appropriate wavelength to form an illuminated sample; and

d. detecting the illuminated sample whereby the viability of cells in a sample is evaluated.

7. A kit for detecting an analyte in a sample, wherein the kit comprises:

a. a compound according to claim 1; and

b. instructions for detecting the analyte.

8. A method for forming a dye conjugate, wherein the method comprises:

a. combining a compound according to claim 1 with a carrier molecule to form a combined sample; and

b. incubating the combined sample for a sufficient amount of time for the compound to form a covalent bond with the carrier molecule,

wherein the carrier molecule comprises an antibody or fragment thereof, an avidin or streptavidin, a biotin, a blood component protein, a dextran, an enzyme, an enzyme inhibitor, a hormone, an IgG binding protein, a fluorescent protein, a growth factor, a lectin, a lipopolysaccharide, a microorganism, a metal binding protein, a metal chelating moiety, a non-biological microparticle, a peptide toxin, a phosphotidylserinebinding protein, a structural protein, a small-molecule drug, or a tyramide.

9. The method according to claim 8, further comprising separating un-conjugated compound from the compounds that formed a covalent bond with the carrier molecule.

10. A method for forming a dye conjugate, wherein the method comprises:

a. combining a compound according to claim 1 with a solid support to form a combined sample; and

b. incubating the combined sample for a sufficient amount of time for the compound to form a covalent bond with the solid support,

wherein the solid support comprises Sepharose, poly(acrylate), polystyrene, poly(acrylamide), polyol, agarose, agar, cellulose, dextran, starch, FICOLL, heparin, glycogen, amylopectin, mannan, inulin, nitrocellulose, diazocellulose or starch.

11. The method according to claim 10, further comprising separating un-conjugated compound from the compounds that formed a covalent bond with the solid support.

12. A method for forming a dye conjugate, wherein the method comprises:

a. combining a compound according to claim 1 with a solid support to form a combined sample; and

b. incubating the combined sample for a sufficient amount of time for the compound to form a covalent bond with the solid support,

wherein the solid support comprises a microfluidic chip, a silicon chip, a microscope slide, a microplate well, silica gels, polymeric membranes, particles, derivatized plastic films, glass beads, cotton, plastic beads, alumina gels, polysaccharides, polyvinylchloride, polypropylene, polyethylene, nylon, latex bead, magnetic bead, paramagnetic bead, or superparamagnetic bead.

13. The method according to claim 12, further comprising separating un-conjugated compound from the compounds that formed a covalent bond with the solid support.