Click chemistry for the production of reporter molecules

• US 8,193,335 B2
• Filed: 10/31/2007
• Issued: 06/05/2012
• Est. Priority Date: 10/31/2006
• Status: Active Grant

• Current Assignee: Baseclick GmbH
• Original Assignee: Baseclick GmbH
• Inventors: Carell, Thomas, Schwögler, Anja
• Primary Examiner(s): Riley, Jezia
• Application Number:
  US12/447,526
• Publication Number:
  US 20100081137A1
• Time in Patent Office: 1,679 Days
• Field of Search: 536/25.3, 536/26.6, 536/23.1
• US Class Current: 536/25.3
• CPC Class Codes: C07H 19/06 Pyrimidine radicals
• CPC Class Codes: C07H 19/10 with the saccharide radical esterified by phosphoric or polyphosphoric acids
• CPC Class Codes: C07H 19/14 Pyrrolo-pyrimidine radicals
• CPC Class Codes: C07H 19/16 Purine radicals
• CPC Class Codes: C07H 19/20 with the saccharide radical esterified by phosphoric or polyphosphoric acids
• CPC Class Codes: C07H 21/00 Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids

Abstract

The present invention relates to methods for producing reporter molecules suitable for the detection of analytes, e.g. nucleic acids. Further, the present invention relates to methods and regions for detecting analytes.

Claims

1. A method for producing a reporter molecule comprising at least two different functional groups, said method comprising:

(a) synthesizing said reporter molecule from a plurality of building blocks, wherein at least one building block comprises a first handle group which is selected from the group consisting of an alkyne group and a protected alkyne group, wherein at least one building block comprises a second handle group which is selected from the group consisting of an alkyne group and a protected alkyne group, and wherein said first handle group is different from said second handle group;

(b) coupling a first reaction partner to said first handle group under conditions wherein said first handle group is reactive and said second handle group is not reactive, wherein said first reaction partner comprises a first functional group; and

subsequently

(c) coupling a second reaction partner to said second handle group wherein said second reaction partner comprises a second functional group and wherein said first functional group is different from said second functional group, wherein said reporter molecule is selected from the group consisting of nucleic acids and nucleic acid analogues.

2. The method of claim 1, wherein said reporter molecule comprises up to 2000 building blocks.

3. The method of claim 1, wherein said reporter molecule comprises 4-200 building blocks.

4. The method of claim 1, wherein said reporter molecule comprises 10-100 building blocks.

5. The method of claim 1, wherein said functional groups are selected from the group consisting of labelling groups, quencher groups and attachment groups.

6. The method of claim 5, wherein said labelling groups are dyes, and said attachment groups are selected from the group consisting of biotin, biotin derivatives and hapten.

7. The method of claim 1, wherein said first and said second functional groups are a labelling group and a quencher group or wherein said first and said second functional group are a labelling group and an attachment group.

8. The method of claim 1, wherein said handle groups are selected from the group consisting of alkyne groups and protected alkyne groups.

9. The method of claim 8, wherein a reaction partner comprising an azide group is coupled to an alkyne group via Click reaction.

10. The method of claim 1, wherein said first reaction partner is coupled to said first handle group under conditions wherein said first handle group is unprotected and said second handle group is protected.

11. The method of claim 1, wherein at least three handle groups are incorporated into said reporter molecule.

12. The method of claim 1, wherein said first handle group is an alkyne group and said second and third handle groups are protected alkyne groups carrying different protection groups.

13. The method of claim 1, wherein the synthesis of said reporter molecule is a chemical synthesis.

14. The method of claim 13, wherein said synthesis is a chemical solid phase synthesis wherein the reporter molecule is synthesized by stepwise assembly of building blocks while being bound to a solid phase.

15. The method of claim 14, wherein at least the first reaction partner is coupled while said reporter molecule is bound to said solid phase.

16. The method of claim 14, wherein said first reaction partner is coupled after said reporter molecule has been cleaved off said solid phase.

17. The method of claim 1, wherein said reporter molecule is synthesized from nucleoside triphosphate building blocks.

18. The method of claim 1, wherein the protected alkyne group is a tris(alkyl/aryl)silyl protected alkyne.