Therapeutic intervention in a genetic disease in an individual by modifying expression of an aberrantly or abnormally expressed gene

• US 8,304,398 B2
• Filed: 04/20/2007
• Issued: 11/06/2012
• Est. Priority Date: 04/20/2006
• Status: Active Grant

• Current Assignee: Academisch Ziekenhuis Leiden
• Original Assignee: Academisch Ziekenhuis Leiden
• Inventors: 't Hoen, Peter Abraham Christiaan, Sterrenburg, Petronella Johanna Elisabeth, den Dunnen, Johannes Theodorus, van Ommen, Garrit Jan Boudewijn
• Primary Examiner(s): Vivlemore, Tracy
• Application Number:
  US12/297,251
• Publication Number:
  US 20100125099A1
• Time in Patent Office: 2,027 Days
• Field of Search: None
• US Class Current: 514/44
• CPC Class Codes: A61K 38/185 Nerve growth factor [NGF]; Brain derived neurotrophic factor [BDNF]; Ciliary neurotrophic factor [CNTF]; Glial derived neurotrophic factor [GDNF]; Neurotrophins, e.g. NT-3
• CPC Class Codes: A61P 21/00 Drugs for disorders of the muscular or neuromuscular system
• CPC Class Codes: A61P 21/04 for myasthenia gravis
• CPC Class Codes: A61P 25/28 for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
• CPC Class Codes: C12N 15/113 Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing when used in plants C12N15/8218
• CPC Class Codes: C12N 15/1136 against growth factors, growth regulators, cytokines, lymphokines or hormones
• CPC Class Codes: C12N 2310/11 Antisense
• CPC Class Codes: C12N 2310/315 Phosphorothioates
• CPC Class Codes: C12N 2310/321 2'-O-R Modification
• CPC Class Codes: C12N 2310/346 having a combination of backbone and sugar modifications
• CPC Class Codes: C12N 2310/3521 Methyl
• CPC Class Codes: C12N 2320/33 Alteration of splicing
• CPC Class Codes: C12N 2501/155 Bone morphogenic proteins [BMP]; Osteogenins; Osteogenic factor; Bone inducing factor
• CPC Class Codes: C12N 2502/1335 Skeletal muscle cells, myocytes, myoblasts, myotubes
• CPC Class Codes: C12N 2510/00 Genetically modified cells
• CPC Class Codes: C12N 5/0658 Skeletal muscle cells, e.g. myocytes, myotubes, myoblasts

Abstract

The present invention provides means and methods for alleviating genetic disease. A genetic defect that has a phenotype in differentiated cells can lead to defects in precursor cells thereof. These so-called secondary defects contribute to the overall disease of the individual. In the present invention, genetic intervention with the aim to alleviate symptoms of genetic disease is directed toward the primary genetic defect in the differentiated cell and the secondary defect in the precursor cell.

Claims

1. A method of preparing a medicament for alleviating a symptom of a genetic muscular dystrophy in an individual in need, wherein said medicament comprises an antisense oligonucleotide that causes exon skipping, comprising:

providing to a cell of said individual a compound comprising said antisense oligonucleotide;

comparing the level of expression of BMP4 in said cell before and after providing said compound to said cell to determine whether said compound reduces, inhibits and/or antagonizes expression of Bone Morphogenetic Protein 4 (BMP4) in said cell of said individual;

wherein a compound that reduces, inhibits and/or antagonizes expression of BMP4 is used to prepare a medicament for alleviating a symptom of a genetic muscular dystrophy; and

wherein said medicament is prepared by synthesizing said oligonucleotide and preparing said oligonucleotide for delivery to said individual.

2. The method according to claim 1, wherein said cell is a myoblast cell or precursor thereof.

3. The method according to claim 1, wherein said compound comprises an antisense RNA or a functional equivalent thereof.

4. The method according to claim 1, wherein expression is decreased, inhibited and/or antagonized by means of a virally transduced DNA sequence.

5. The method according to claim 1, wherein said compound is provided to said cell by means of a viral vector.

6. The method according to claim 1, wherein said genetic muscular dystrophy comprises one of the following diseases:

Duchenne Muscular Dystrophy (DMD), Becker Muscular Dystrophy (BMD), Congenital Muscular Dystrophy (CMD), Distal Muscular Dystrophy (DD), Emery-Dreifuss Muscular Dystrophy (EDMD), Facioscapulohumeral Muscular Dystrophy (FSH), Limb-Girdle Muscular Dystrophy (LGMD), Myotonic Dystrophy (MMD), Oculopharyngeal Muscular Dystrophy (OPMD).

7. The method according to claim 1, further comprising use of a second compound for the preparation of said medicament, wherein said second compound provides a muscle cell of said individual with at least part of the normal function of a gene that is associated with said genetic muscular dystrophy (mutated gene).

8. The method according to claim 7, wherein said second compound comprises an oligonucleotide, or functional equivalent thereof, for skipping an exon of a dystrophin gene.

9. A method for determining whether a BMP4 anti-sense oligonucleotide or a functional equivalent thereof is capable of inducing skipping of an exon in a BMP4 pre-mRNA containing said exon, said method comprising providing a cell expressing said BMP4 pre-mRNA with said oligonucleotide and determining whether said exon is absent from mature mRNA produced from said pre-mRNA.

10. A method according to claim 9, wherein said anti-sense oligonucleotide or a functional equivalent thereof is complementary to said exon.

11. A method according to claim 9, wherein said anti-sense oligonucleotide or a functional equivalent thereof is complementary to an exon-internal part of said exon.

12. A method according to claim 9, wherein said anti-sense oligonucleotide or a functional equivalent thereof is complementary to exon 4 of BMP4.

14. A method according to claim 9, wherein said anti-sense oligonucleotide is provided to said cell by means of a viral vector.

15. A method according to claim 14, wherein said viral vector comprises an expression cassette for expression of said anti-sense oligonucleotide.

13. A method of preparing a medicament for alleviating a symptom of a genetic muscular dystrophy in an individual in need, wherein said medicament comprises an anti-sense oligonucleotide that causes exon skipping or a functional equivalent thereof that is complementary to an exon of BMP-4, said method comprising:

providing to a cell of a-said individual an anti-sense oligonucleotide;

comparing the level of expression of BMP4 in said cell before and after providing said anti-sense oligonucleotide to said cell to determine whether said anti-sense oligonucleotide reduces, inhibits or antagonizes expression of BMP-4 in said cell of said individual;

wherein a compound that reduces, inhibits or antagonizes expression of BMP-4 is used to prepare a medicament for alleviating a symptom of a genetic muscular dystrophy; and

wherein said medicament is prepared by synthesizing said oligonucleotide and preparing said oligonucleotide for delivery to said individual.

16. A method of treating a genetic muscular dystrophy in an individual in need, comprising administering to said individual an anti-sense oligonucleotide that causes exon skipping, or a functional equivalent thereof, that is complementary to an exon of BMP-4, thereby treating said genetic muscular dystrophy.

17. The method of claim 16, wherein said antisense oligonucleotide binds to said exon and decreases the expression of said BMP-4 protein.