Compositions and methods for treating cancer, inhibiting proliferation, and inducing cell death

• US 8,410,070 B2
• Filed: 09/11/2009
• Issued: 04/02/2013
• Est. Priority Date: 09/12/2008
• Status: Active Grant

• Current Assignee: University of Louisville
• Original Assignee: University of Louisville
• Inventors: Miller, Donald M., Thomas, Shelia Diann, Sedoris, Kara Joyce
• Primary Examiner(s): GIBBS, TERRA C
• Application Number:
  US13/063,509
• Publication Number:
  US 20110213019A1
• Time in Patent Office: 1,299 Days
• Field of Search: 536/24.1, 536/24.5, 514/44
• US Class Current: 514/44.A
• CPC Class Codes: A61K 31/7088 Compounds having three or more nucleosides or nucleotides
• CPC Class Codes: A61P 35/00 Antineoplastic agents
• CPC Class Codes: A61P 35/02 specific for leukemia

Abstract

Quadruplex-forming guanine-rich nucleic acid sequences are useful in compositions and methods for inhibiting cellular growth and proliferation and inducing cell death. Compositions for treating a patient are provided, including (i) a safe and effective amount of a sequence having at least 80% nucleic acid identity with a guanine-rich promoter gene oligonucleotide (GPGO), and (ii) a carrier, wherein the oligonucleotide forms at least one quadruplex.

Claims

1. A composition for treating a patient, comprising:

(i) a safe and effective amount of at least one isolated oligonucleotide comprising a sequence having at least 80% nucleic acid sequence identity with a sequence selected from the group consisting of SEQ ID NO;

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, and combinations thereof, and

(ii) a carrier,

wherein the isolated oligonucleotide forms at least one quadruplex.

2. The composition of claim 1, comprising at least two isolated oligonucleotides, each oligonucleotide comprising a sequence having at least 80% nucleic acid sequence identity with a sequence selected from the group consisting of SEQ ID NO:

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, and SEQ ID NO;

10 wherein each of said isolated oligonucleotides forms at least one quadruplex.

3. The composition of claim 1, comprising at least three isolated oligonucleotides, each oligonucleotide comprising a sequence having at least 80% nucleic acid sequence identity with a sequence selected from the group consisting of SEQ ID NO:

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, and SEQ ID NO;

10 wherein each of said isolated oligonucleotides forms at least one quadruplex.

4. The composition of claim 1, wherein the isolated oligonucleotide comprises a sequence having at least 90% nucleic acid sequence identity with a sequence selected from the group consisting of SEQ ID NO:

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, and combinations thereof.

5. The composition of claim 1, wherein the isolated oligonucleotide comprises a sequence having at least 95% nucleic acid sequence identity with a sequence selected from the group consisting of SEQ ID NO:

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, and combinations thereof.

6. The composition of claim 1, wherein the isolated oligonucleotide comprises a sequence having at least 98% nucleic acid sequence identity with a sequence selected from the group consisting of SEQ ID NO:

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, and combinations thereof.

7. The composition of claim 1, wherein the isolated oligonucleotide comprises a sequence having at least 99% nucleic acid sequence identity with a sequence selected from the group consisting of SEQ ID NO:

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, and combinations thereof.

8. The composition of claim 1, wherein the isolated oligonucleotide comprises a sequence having essentially 100% nucleic acid sequence identity with a sequence selected from the group consisting of SEQ ID NO:

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, and combinations thereof.

9. The composition of claim 1, wherein the isolated oligonucleotide comprises a sequence selected from the group consisting of SEQ ID NO:

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, and combinations thereof.

10. The composition of claim 1, further comprising a growth inhibiting agent.

11. The composition of claim 1, further comprising a chemotherapeutic agent.

12. A method of treating cancer comprising administering to a patient in need thereof the composition of claim 1.

13. A method of inhibiting cell growth, comprising contacting a cell with the composition of claim 1.

14. A method of inhibiting telomerase activity of a cell, comprising contacting the cell with the composition of claim 1.

15. The method of claim 12 wherein the composition is administered to a patient orally, rectally, parenterally, intracistemally, intravaginally, intraperitoneally, intravesically, locally, or as a buccal or nasal spray.

16. The method of claim 12 wherein the cancer is selected from the group consisting of leukemia, lymphoma, brain cancer, breast cancer, lung cancer, pancreatic cancer, colon cancer, ovarian cancer, liver cancer, prostate cancer, bone cancer, gastro-intestinal cancer, ocular cancer, head and neck cancer, and melanoma.

17. A method of treating a patient having a tumor, the method comprising:

(a) performing a biopsy of the patient'"'"'s tumor;

(b) determining a gene expression profile of the tumor;

(c) identifying one or more genes that are overexpressed in the tumor, based on the gene expression profile of step (b);

(d) selecting one or more guanosine-rich promoter gene oligonucleotide (GPGO) sequences corresponding to the overexpressed genes identified in step (c);

(e) administering to the patient a composition comprising a safe and effective amount of the one or more GPGO sequences of step (d), wherein the one or more GPGO sequences have at least 80% nucleic acid sequence identity with a sequence selected from the group consisting of SEQ ID NO;

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, and combinations thereof, and wherein each of the one or more GPGO sequences forms at least one quadruplex.

18. The method of claim 17, wherein the one or more GPGO sequences are selected from the group consisting of SEQ ID NO:

1, SEQ ID NO;

2, SEQ ID NO;

3, SEQ ID NO;

4, SEQ ID NO;

5, SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, and combinations thereof, and wherein each of the one or more GPGO sequences forms at least one quadruplex.