Method of improving the resolution of compounds eluted from a chromatography device

• US 8,615,369 B2
• Filed: 08/25/2010
• Issued: 12/24/2013
• Est. Priority Date: 08/26/2009
• Status: Active Grant

• Current Assignee: Thermo Fisher Scientific (Bremen) GmbH (Thermo Fisher Scientific Incorporated)
• Original Assignee: Thermo Fisher Scientific (Bremen) GmbH (Thermo Fisher Scientific Incorporated)
• Inventors: Pfaff, Hans
• Primary Examiner(s): Armand, Marc
• Assistant Examiner(s): SUAREZ, FELIX E
• Application Number:
  US12/868,408
• Publication Number:
  US 20110054804A1
• Time in Patent Office: 1,217 Days
• Field of Search: 702/19, 702/23, 702/25, 702/28, 702/179, 702/180, 702/183, 73/232.7, 250/341.6, 250/287
• US Class Current: 702/25
• CPC Class Codes: G01N 30/02 Column chromatography
• CPC Class Codes: G01N 30/72 Mass spectrometers mass spectrometers per se H01J49/00
• CPC Class Codes: G01N 30/74 Optical detectors measurement of intensity, velocity, spectral content, polarisation, or phase of infrared, visible or ultraviolet light G01J
• CPC Class Codes: G01N 30/8624 Detection of slopes or peaks; baseline correction
• CPC Class Codes: G01N 30/8631 Peaks
• CPC Class Codes: G01N 30/8637 Peak shape
• CPC Class Codes: G01N 30/8675 Evaluation, i.e. decoding of the signal into analytical information for analysis of specific compounds see also G01N30/88 and subgroups of G01N33/00; chemical libraries per se C40B

Abstract

A method of and apparatus for improving the resolution of compounds eluted from a separation device are disclosed, particularly suited for use in the fields of gas or liquid chromatography. Embodiments of the invention provide that spectroscopic data are measured from an effluent eluted from a chromatography device as a function of elution time; peaks in intensity are identified to form a first set of identified peaks; peaks not due to an eluting compound are discarded from the first set of identified peaks thereby forming a second set of identified peaks from those retained; each peak in the second set of peaks is transformed into a first model peak centered on the elution time of each peak in the second set of peaks; some or all the model peaks created are added together to create a new chromatogram; and all identified peaks in intensity in the second set of peaks having elution times within a given time period of identified peaks in intensity in the new chromatogram are grouped together and assigned to a single eluted compound thereby forming a processed data set.

Claims

1. A method of improving the resolution of compounds eluted from a chromatography device comprising:

(a) measuring spectroscopic data from an effluent eluted from a chromatography device as a function of elution time, the effluent containing eluted compounds;

(b) identifying at least some peaks in intensity as a function of time in at least some of the measured spectroscopic data to form a first set of identified peaks;

(c) discarding from the first set of identified peaks those peaks that are not due to an eluted compound thereby forming a second set of peaks from those retained;

(d) transforming each peak in the second set of peaks into a first model peak centered on the elution time of each peak in the second set of peaks;

(e) adding together some or all the model peaks created in step (d) to create a new chromatogram;

(f) identifying at least some peaks in intensity in the new chromatogram;

(g) grouping together all identified peaks in intensity in the second set of peaks having elution times within a given time period of identified peaks in intensity in the new chromatogram and assigning them to a single eluted compound thereby forming a processed data set;

wherein steps (b)-(g) are performed by at least one of;

(i) a computer running computer software or (ii) a dedicated electronic processor.

2. The method of claim 1 wherein in step (c) peaks are discarded on the basis of the intensity of the identified peak above a local background of the spectroscopic data.

3. The method of claim 1 wherein in step (c) peaks are discarded on the basis of a match between the shape of the identified peak and a second model peak shape.

4. The method of claim 1 wherein in step (c) peaks are discarded from the first set of identified peaks on the basis of measured peak intensity and measured peak width compared with expected peak intensity and expected peak width.

5. The method of claim 1 wherein in step (c) peaks are discarded on the basis of both the intensity of the identified peak above a local background of the spectroscopic data and on the basis of a match between the shape of the identified peak and a second model peak shape.

6. The method of claim 1 wherein the first model peak shape is based upon one or more of:

a Gaussian peak shape, a bell-shaped peak shape, a Lorentzian peak shape, a parabolic peak shape or a triangular peak shape.

7. The method of claim 3 wherein the second model peak shape is based upon one or more of:

a Gaussian peak shape, a bell-shaped peak shape, a Lorentzian peak shape, a parabolic peak shape or a triangular peak shape and has a full width at half height (FWHH) which is a linear function of the elution time at which the identified peak occurred.

8. A method according to claim 2 wherein a peak factor is determined for each identified peak of the measured spectroscopic quantities, the peak factor being representative of the intensity of the peak above the local background, and the peak factor (PF) is a function of:

(i) the intensity of the identified peak, and

(ii) at least one of;

a noise on the measured spectroscopic quantity in the vicinity of the identified peak, and, the intensity of one or more minima in the vicinity of the identified peak.

9. A method according to claim 8 wherein the PF is defined by an expression containing the term I_maximum/I_minimum, where I_maximum is intensity of the maximum of the identified peak and I_minimum is the intensity of a minimum of the measured spectroscopic quantity local to the maximum of the identified peak in elution time.

10. A method according to claim 3 wherein correlation factors are determined between each of the identified peaks of the measured spectroscopic quantities and a second model peak shape, the correlation factor being representative of the match between the shape of the identified peak and the second model peak shape, the correlation factor (CF) being a function of the intensities of the identified peak and the second model peak shape at a plurality of points.

11. The method according to claim 10 wherein the correlation factor is a sample correlation coefficient.

12. A method according to claim 1 wherein in step (b) measured spectroscopic data is not analysed to identify peaks if the signal to noise ratio of the spectroscopic data as a function of time is less than a predetermined or calculated threshold.

13. A method according to claim 1 wherein the measured spectroscopic data have spikes removed in step (c).

14. A method according to claim 1 wherein the measured spectroscopic data are smoothed before step (d).

15. A method according to claim 1 wherein the given time period in step (g) is a function of the uncertainty of the measured spectroscopic data in the time domain.

16. A method according to claim 1 wherein the measured spectroscopic data are mass spectra.

17. A method according to claim 1 wherein the chromatography device comprises a liquid chromatograph.

18. A non-transitory computer readable medium encoded with a computer program containing instructions stored therein for causing a computer processor to perform a method of transforming measured spectroscopic data to improve resolution, the spectroscopic data representing an effluent eluted from a chromatography device as a function of elution time, the effluent containing eluted compounds, the method comprising steps of:

(a) identifying at least some peaks in intensity as a function of time in at least some of the measured spectroscopic data to form a first set of identified peaks;

(b) discarding from the first set of identified peaks those peaks that are not due to an eluted compound thereby forming a second set of peaks from those retained;

(c) transforming each peak in the second set of peaks into a first model peak centered on the elution time of each peak in the second set of peaks;

(d) adding together some or all the model peaks created in step (c) to create a new chromatogram;

(e) identifying at least some peaks in intensity in the new chromatogram;

(f) grouping together all identified peaks in intensity in the second set of peaks having elution times within a given time period of identified peaks in intensity in the new chromatogram and assigning them to a single eluted compound thereby forming a processed data set.

19. Apparatus for improving the resolution of compounds eluted from a chromatography device, comprising:

(a) a device for measuring spectroscopic data from an effluent eluted from a chromatography device as a function of elution time, the effluent containing eluted compounds;

(b) a module for identifying at least some peaks in intensity as a function of time in at least some of the measured spectroscopic data to form a first set of identified peaks;

(c) a module for discarding from the first set of identified peaks those peaks that are not due to an eluted compound thereby forming a second set of peaks from those retained;

(d) a module for transforming each peak in the second set of peaks into a first model peak centered on the elution time of each peak in the second set of peaks;

(e) a module for adding together some or all the model peaks created in step (d) to create a new chromatogram;

(f) a module for identifying at least some peaks in intensity in the new chromatogram; and

(g) a module for grouping together all identified peaks in intensity in the new chromatogram having elution times within a given time period and assigning them to a single eluted compound thereby forming a processed data set.