Microarrays and uses therefor

• US 8,637,264 B2
• Filed: 06/30/2011
• Issued: 01/28/2014
• Est. Priority Date: 02/04/1998
• Status: Expired due to Fees

• Current Assignee: Life Technologies Corporation (Thermo Fisher Scientific Incorporated)
• Original Assignee: Life Technologies Corporation (Thermo Fisher Scientific Incorporated)
• Inventors: Hoeffler, James P., Fernandez, Joseph M., Nasoff, Marc S.
• Primary Examiner(s): COOK, LISA V
• Application Number:
  US13/173,637
• Publication Number:
  US 20120004131A1
• Time in Patent Office: 943 Days
• Field of Search: None
• US Class Current: 435/7.21
• CPC Class Codes: B01J 2219/00605 the compounds being directly bound or immobilised to solid supports
• CPC Class Codes: B01J 2219/00608 DNA chips
• CPC Class Codes: B01J 2219/0061 The surface being organic
• CPC Class Codes: B01J 2219/00612 the surface being inorganic
• CPC Class Codes: B01J 2219/00626 Covalent
• CPC Class Codes: B01J 2219/00637 by coating it with another layer
• CPC Class Codes: B01J 2219/00641 the porous medium being continuous, e.g. porous oxide substrates
• CPC Class Codes: B01J 2219/00659 Two-dimensional arrays
• CPC Class Codes: C12Q 1/6837 using probe arrays or probe chips C12Q1/6874 takes precedence
• CPC Class Codes: G01N 33/543 with an insoluble carrier for immobilising immunochemicals
• CPC Class Codes: G01N 33/54393 Improving reaction conditions or stability, e.g. by coating or irradiation of surface, by reduction of non-specific binding, by promotion of specific binding
• CPC Class Codes: G01N 33/548 Carbohydrates, e.g. dextran
• CPC Class Codes: G01N 33/6845 Methods of identifying protein-protein interactions in protein mixtures
• CPC Class Codes: G01N 33/6854 Immunoglobulins

Abstract

Methods of using microarrays to simplify analysis and characterization of genes and their function are provided. Such methods can be used to identify and characterize antibodies having binding affinity for a specific target antigen. A method of determining gene expression at the protein level by contacting an array of characterized or uncharacterized antibodies on a solid surface with one or more proteins and identifying the antibodies to which said protein(s) binds also is provided. This method can be used to compare the protein expression in two different populations of cells, such as normal cells and cancer cells or resting cells and stimulated cells. In addition, a method of determining gene expression at the protein level by contacting a microarray of nucleic acid samples derived from a variety of different sources with one or more nucleic acid probes then identifying the sample or samples to which the probe binds is provided.

Claims

1. A method of diagnosing a disorder comprising:

(a) contacting a first array of antibodies specific for one or more antigens characteristic of a disorder with a biological sample obtained from a first subject suspected of having the disorder under conditions suitable for the formation of an antigen;

antibody complex, wherein the presence of the antigens in the biological sample would be indicative of the disorder;

(b) contacting second array of antibodies identical to the first array with a biological sample obtained from a second subject who does not have the disorder under conditions suitable for the formation of an antigen;

antibody complex;

(c) detecting the formation of any antibody;

antigen complexes; and

(d) comparing the binding patterns of the first and the second antibody arrays.

2. The method according to claim 1, wherein the biological sample is a population of cells, body fluid or an extracted tissue.

3. The method according to claim 1, wherein the biological sample is cerebral spinal fluid, blood, serum, plasma, urine or saliva.

4. The method according to claim 1, wherein the disorder is stroke, cerebral hemorrhage, myocardial infarction, peripheral blood clots, diabetes, cancer, Alzheimer'"'"'s disease or sepsis.