Systems and methods for detection of cells using engineered transduction particles

• US 8,829,473 B1
• Filed: 10/08/2013
• Issued: 09/09/2014
• Est. Priority Date: 03/13/2013
• Status: Active Grant

• Current Assignee: Roche Molecular Systems (Roche Holding AG)
• Original Assignee: GeneWEAVE BioSciences, Inc. (Roche Holding AG)
• Inventors: Richardson, Bruce J., Yee, Victor H., Griswold, Ryan C., Olson, Kenneth G., Stellmacher, Rick V.
• Primary Examiner(s): BOWERS, NATHAN ANDREW
• Application Number:
  US14/048,974
• Publication Number:
  US 20140273180A1
• Time in Patent Office: 336 Days
• Field of Search: 422/82.05, 422/82.08, 250/576, 250/458.1, 250/573, 250/461.2, 435/288.7, 435/287.1, 435/287.2
• US Class Current: 250/461.2
• CPC Class Codes: B01L 2200/028 Modular arrangements
• CPC Class Codes: B01L 2200/16 Reagents, handling or storing thereof
• CPC Class Codes: B01L 2300/021 Identification, e.g. bar codes
• CPC Class Codes: B01L 2300/042 Caps; Plugs
• CPC Class Codes: B01L 2300/047 Additional chamber, reservoir
• CPC Class Codes: B01L 2300/049 Valves integrated in closure
• CPC Class Codes: B01L 2300/0672 Integrated piercing tool
• CPC Class Codes: B01L 2400/0478 pistons
• CPC Class Codes: B01L 2400/06 Valves, specific forms thereof
• CPC Class Codes: B01L 2400/0683 mechanically breaking a wall or membrane within a channel or chamber
• CPC Class Codes: B01L 3/502 with fluid transport, e.g. in multi-compartment structures centrifugal-type cuvettes G01N21/07; analysis by separation into components G01N30/00; automatic analysers G01N35/00
• CPC Class Codes: B01L 3/50825 Closing or opening means, corks, bungs closures for containers B65D; means for removing stoppers B67B7/02
• CPC Class Codes: B01L 3/52 Containers specially adapted for storing or dispensing a reagent B01L3/02 takes precedence; containers for medical or pharmaceutical purposes A61J1/00; containers in general B65D; storing or dispensing test elements G01N33/4875; automated reagent dispensing G01N35/1002
• CPC Class Codes: B01L 3/523 with means for closing or opening
• CPC Class Codes: B01L 3/54 Labware with identification means identification of carriers, materials or components in automatic analysers G01N35/00732
• CPC Class Codes: B01L 3/545 for laboratory containers
• CPC Class Codes: B01L 7/00 Heating or cooling apparatus autoclaves B01J3/04; Heat insulating devices
• CPC Class Codes: C12Q 1/02 involving viable microorganisms
• CPC Class Codes: C12Q 1/04 Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor C12Q1/6897 takes precedence
• CPC Class Codes: C12Q 1/06 Quantitative determination
• CPC Class Codes: C12Q 1/10 : Enterobacteria
• CPC Class Codes: C12Q 1/14 : Streptococcus; Staphylococcus
• CPC Class Codes: C12Q 1/66 : involving luciferase
• CPC Class Codes: C12Q 1/6897 : involving reporter genes operably linked to promoters
• CPC Class Codes: G01J 1/00 : Photometry, e.g. photographic exposure meter spectrophotometry G01J3/00; specially adapted for radiation pyrometry G01J5/00 ; exposure meters built in cameras G03B17/06
• CPC Class Codes: G01N 2035/00346 : Heating or cooling arrangements
• CPC Class Codes: G01N 2035/0405 : manipulating closing or opening means, e.g. stoppers, screw caps, lids or covers
• CPC Class Codes: G01N 21/01 : Arrangements or apparatus for facilitating the optical investigation
• CPC Class Codes: G01N 21/03 : Cuvette constructions
• CPC Class Codes: G01N 21/13 : Moving of cuvettes or solid samples to or from the investigating station handling materials for automatic analysis G01N35/00
• CPC Class Codes: G01N 21/76 : Chemiluminescence; Bioluminescence
• CPC Class Codes: G01N 21/763 : Bioluminescence
• CPC Class Codes: G01N 2333/005 : from viruses
• CPC Class Codes: G01N 2333/195 : from bacteria

Abstract

Systems and methods for detecting and/or identifying target cells (e.g., bacteria) using engineered transduction particles are described herein. In some embodiments, a method includes mixing a quantity of transduction particles within a sample. The transduction particles are associated with a target cell. The transduction particles are non-replicative, and are engineered to include a nucleic acid molecule formulated to cause the target cell to produce a series of reporter molecules. The sample and the transduction particles are maintained to express the series of the reporter molecules when target cell is present in the sample. A signal associated with a quantity of the reporter molecules is received. In some embodiments, a magnitude of the signal is independent from a quantity of the transduction particle above a predetermined quantity.

Claims

1. An apparatus, comprising:

a housing defining a channel configured to receive a sample container, the housing defining a detection volume configured to place the channel in communication with a detector, the housing including a first seal surface and a second seal surface, a first portion of the sample container and the first seal surface configured to isolate the detection volume from a volume outside of the housing when a second portion of the sample container is disposed within the detection volume; and

a shutter having a portion movably disposed within the housing between a first shutter position and a second shutter position, the shutter defining a port configured to receive at least one of a light source or a light guide, a seal surface of the shutter and the second seal surface configured to isolate the detection volume from the channel of the housing when shutter is in the first shutter position, the port in communication with the detection volume when the shutter is in the first shutter position, the channel of the housing being in communication with the detection volume when the shutter is in the second shutter position, the port being isolated from the detection volume when the shutter is in the second shutter position.

2. The apparatus of claim 1, wherein the first seal surface includes a gasket.

3. The apparatus of claim 1, wherein the shutter is in the first shutter position when the second end portion of the sample container within the channel is outside of the detection volume, and the shutter is in the second shutter position when the second end portion of the sample container is within the detection volume.

4. The apparatus of claim 1, wherein the shutter includes an actuation surface configured to engage the second portion of the sample container to move the shutter from the first shutter position to the second shutter position.

5. The apparatus of claim 1, wherein the shutter includes a ramp configured to engage the second portion of the sample container when the second portion of the sample container moves within the channel towards detection volume to move the shutter towards the second shutter position.

6. The apparatus of claim 1, wherein the shutter is configured to translate within the housing in a direction offset from a longitudinal axis of the channel.

7. The apparatus of claim 1, further comprising:

a biasing member configured to urge shutter towards the first shutter position.

8. The apparatus of claim 1, wherein the shutter defines a mounting portion configured to be coupled to a biasing member.

9. The apparatus of claim 1, wherein the shutter defines a biasing channel configured to receive a biasing member, the biasing member configured to urge shutter towards the first shutter position in a direction offset from a longitudinal axis of the channel.

10. The apparatus of claim 1, wherein the detection volume is configured to place the channel in communication with the detector via a detection window, the port in communication with the detection window when the shutter is in the first shutter position.

11. The apparatus of claim 10, wherein the detection window is aligned with a longitudinal axis of the channel.

12. The apparatus of claim 1, wherein the shutter defines a passageway configured to receive at least the second portion of the sample container, the channel of the housing being aligned with the passageway to place the second portion of the container in communication with the detection volume when the shutter is in the second shutter position.

13. An apparatus, comprising:

a housing defining a channel configured to receive a sample container, the housing defining a detection volume configured to place the channel in communication with a detector, the housing including a seal surface; and

a shutter having a portion movably disposed within the housing between a first shutter position and a second shutter position, the shutter defining a port configured to receive at least one of a light source or a light guide, the port in communication with the detection volume when the shutter is in the first shutter position, the port being isolated from the detection volume when the shutter is in the second shutter position, the shutter including a seal surface and an actuation portion, the actuation portion configured to engage a distal end portion of the sample container to translate the shutter in a direction offset from a longitudinal axis of the channel from the first shutter position to the second shutter position when the distal end portion of the container is moved towards the detection volume, the seal surface of the shutter and the seal surface of the housing configured to isolate the detection volume from the channel of the housing when shutter is in the first shutter position, the seal surface of the shutter configured to maintain sliding contact with the seal surface of the housing when the shutter is moved from the first shutter position to the second shutter position, the channel of the housing being in communication with the detection volume when the shutter is in the second shutter position.

14. The apparatus of claim 13, wherein:

the seal surface of the housing is a distal seal surface, the housing defining a proximal seal surface; and

a proximal end portion of the sample container and the proximal seal surface configured to isolate the detection volume from a volume outside of the housing when the distal end portion of the sample container is disposed within the detection volume.

15. The apparatus of claim 13, further comprising:

a biasing member configured to urge shutter towards the first shutter position.

16. The apparatus of claim 13, wherein the shutter defines a passageway configured to receive at least the distal end portion of the sample container, the channel of the housing being aligned with the passageway to place the distal end portion of the container in communication with the detection volume when the shutter is in the second shutter position.

17. The apparatus of claim 13, wherein the detection volume is configured to place the channel in communication with the detector via a detection window, the detection window being aligned with the longitudinal axis of the channel.

18. An apparatus, comprising:

a housing defining a channel configured to receive a sample container, the housing including a detection window configured to place a distal end portion of the sample container in communication with a detector, the housing including a seal surface; and

a shutter defining a passageway configured to receive the distal end portion of the sample container therein, the shutter movably disposed within the housing between a first shutter position and a second shutter position, the shutter defining a port configured to receive at least one of a light source or a light guide, the port in communication with the detection window when the shutter is in the first shutter position, the port being isolated from the detection window when the shutter is in the second shutter position, a seal surface of the shutter and the seal surface of the housing configured to isolate the detection window from the channel of the housing and the passageway of the shutter when shutter is in the first shutter position, the channel of the housing being aligned with the passageway of the shutter such that the distal end portion of the sample container can be received within the passageway of the shutter to place the distal end portion of the sample container in communication with the detection window when the shutter is in the second shutter position.

19. The apparatus of claim 18, wherein:

the seal surface of the housing is a distal seal surface, the housing defining a proximal seal surface; and

a proximal end portion of the sample container and the proximal seal surface configured to isolate the detection window from a volume outside of the housing when the distal end portion of the sample container is disposed in communication with the detection window.

20. The apparatus of claim 18, wherein the shutter includes an actuation surface configured to engage the distal end portion of the sample container to move the shutter from the first shutter position to the second shutter position when the distal end portion of the container is moved towards the detection window.

21. The apparatus of claim 18, wherein the shutter is configured to translate within the housing in a direction offset from a longitudinal axis of the channel.

22. The apparatus of claim 18, wherein the detection window is aligned with a longitudinal axis of the channel.