Process and apparatus for measuring binding events on a microarray of electrodes

• US 8,855,955 B2
• Filed: 09/29/2005
• Issued: 10/07/2014
• Est. Priority Date: 09/29/2005
• Status: Active Grant

• Current Assignee: CustomArray, Inc. (Genscript Biotech Corp.)
• Original Assignee: CustomArray, Inc. (Genscript Biotech Corp.)
• Inventors: Peyvan, Kia, Bizak, Michael, Campbell, Colin, Lee, Rand William
• Primary Examiner(s): NGHIEM, MICHAEL P
• Application Number:
  US11/238,470
• Publication Number:
  US 20070072169A1
• Time in Patent Office: 3,295 Days
• Field of Search: 702/64
• US Class Current: 702/64
• CPC Class Codes: G01N 27/3277 being a redox reaction, e.g. detection by cyclic voltammetry voltammetry per se G01N27/42, G01N27/48
• CPC Class Codes: G01R 19/0092 measuring current only all subgroups of G01R19/00 take precedence

Abstract

There is disclosed a process and apparatus for reading electrical current of electrodes on a microarray of electrodes. Those electrodes having binding events are detected by a difference in electrical current flow. Enzymes on targets catalyze the conversion of substrate to product, which is detectable by electrochemical reduction at each electrode on the microarray of electrodes. The apparatus has an integration circuit that provides a voltage output that is measured and recorded over time and used to calculate an average current flow. A potentiometer equalizes voltage at electrodes undergoing measurement compared to grounded electrodes.

Claims

1. A process for reading electrical current of electrodes on a microarray of electrodes comprising the steps of:

(a) providing a measurement system having a control system, an integration circuit, a microarray chamber, a plurality of voltage lines, an analog to digital converter connected to digital circuitry and analog circuitry, where the analog circuitry includes the integration circuit, where the digital circuitry is separate from the analog circuitry and includes the control system, where the control system, the integration circuit, and the microarray chamber are in circuit communication, where the microarray chamber contains a microarray having a plurality of electrodes in circuit communication with the control system and the integration circuit, where the voltage lines are switchably connectable to each electrode by the control system, where the integration circuit has a capacitance value, where the integration circuit has an integrating transimpedance amplifier having a positive input and a potentiometer circuit connected to the positive input via an operational amplifier;

(b) initializing measurement by setting a measurement set of the electrodes to approximately ground, setting a counter electrode voltage of at least one counter electrode, and pausing for a steady state period, where the at least one counter electrode is in fluid communication with the measurement set of the electrodes;

(c) measuring the current for each electrode of the measurement set of electrodes by (i) using a first voltage line to connect a measurement electrode to the integration circuit, the integration circuit having a reset switch, where the reset switch is in the closed position, (ii) pausing for an electrode settling period, (iii) opening the reset switch to measure and record a voltage response from the output of the integration circuit for a measurement time at a sampling rate, (iv) closing the reset switch, and (v) switching the measurement electrode back to a second voltage line; and

(d) calculating the current of each of the electrodes of the measurement set.

2. The process for reading electrical current of electrodes on a microarray of electrodes of claim 1, where the first voltage line connects the microarray to the integration circuit and connects the integration circuit to the control system.

3. The process for reading electrical current of electrodes on a microarray of electrodes of claim 1, where the second voltage line is settable to ground, where a third voltage line is settable to a programmable fixed voltage.

4. The process of claim 3, where the programmable fixed voltage of the at least one counter electrode is approximately 0.02 to 0.5 volts.

5. The process for reading electrical current of electrodes on a microarray of electrodes of claim 3, where the setting the measurement set of electrodes is carried out using the second voltage line and the setting the counter electrode voltage is carried out using the third voltage line.

6. The process for reading electrical current of electrodes on a microarray of electrodes of claim 1, where the integration circuit has an integrating transimpedance amplifier having a positive input and a potentiometer circuit connected to the positive input.

7. The process for reading electrical current of electrodes on a microarray of electrodes of claim 1, where calculating the current of each electrode is carried out using linear regression of the voltage response and the measurement time.

8. The process for reading electrical current of electrodes on a microarray of electrodes of claim 1, where the linear regression analysis results in a correlation between the voltage response and the measurement time, where the correlation has a slope where the current is equal to the negative of the slope multiplied by the capacitor value.

9. The process for reading electrical current of electrodes on the microarray of electrodes of claim 1, where the capacitor value is approximately 5 to 20 picofarads.

10. The process for reading electrical current of electrodes on the microarray of electrodes of claim 1, further comprising a digital to analog converter, where an adjusting method for the potentiometer circuit is selected from the group consisting of manual adjustment before assembling and software adjustment using computer software and a measurement and feedback circuit having the digital to analog converter and the analog to digital converter.

11. The process for reading electrical current of electrodes on the microarray of electrodes of claim 1, where the electrode settling period is approximately 10 to 600 microseconds.

12. The process for reading electrical current of electrodes on the microarray of electrodes of claim 1, where the steady state period is approximately 4 to 60 seconds.

13. The process for reading electrical current of electrodes on the microarray of electrodes of claim 1, where the measurement time is approximately 0.5 to 5 milliseconds.

14. The process for reading electrical current of electrodes on the microarray of electrodes of claim 1, where the sampling rate is approximately one data pair every 10 to 100 microseconds.

15. A process for reading electrical current of electrodes on a microarray of electrodes comprising the steps of:

(a) providing a measurement system having a control system, an integration circuit, a microarray chamber, a plurality of voltage lines, an analog to digital converter, digital circuitry, and analog circuitry, where the analog circuitry includes the integration circuit, where the analog to digital converter transfers the output of the analog circuitry to the digital circuitry, where the digital circuitry is separate from the analog circuitry and includes the control system, where the control system, the integration circuit, and the microarray chamber are in circuit communication, where the microarray chamber contains a microarray having a plurality of electrodes in circuit communication with the control system and the integration circuit, where the voltage lines are switchably connectable to each electrode by the control system, where the integration circuit has an integrating transimpedance amplifier having a positive input and a potentiometer circuit connected to the positive input via an operational amplifier;

(b) initializing measurement by setting a measurement set of the electrodes to approximately ground, setting a counter electrode voltage of at least one counter electrode, and pausing for a steady state period, where the at least one counter electrode is in fluid communication with the measurement set of the electrodes;

(c) measuring the current for each electrode of the measurement set of electrodes current by (i) using a first voltage line a to connect connecting a measurement electrode to the integration circuit, the integration circuit where the reset switch is in the closed position, (ii) pausing for an electrode settling period, (iii) opening the reset switch to measure and record a voltage response from the output of the integration circuit for a measurement time at a sampling rate, (iv) closing the reset switch, and (v) switching the measurement electrode back to a second voltage line; and

(d) calculating the current of each of the electrodes of the measurement set, where calculating the current of each electrode is carried out using linear regression of the voltage response and measurement time, where the linear regression analysis results in a correlation between the voltage response and the measurement time, there the correlation has a slope, where the current is equal to the negative of the slope multiplied by the capacitor value.

16. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where the first voltage line connects the microarray to the integration circuit and connects the integration circuit to the control system.

17. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where the second voltage line is settable to ground, where a third voltage line is settable to a programmable fixed voltage.

18. The process of claim 17, where the programmable fixed voltage of the at least one counter electrode is approximately 0.02 to 0.5 volts.

19. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where the setting the measurement set of electrodes step is done with the second voltage line and the setting the counter electrode voltage is done using the third voltage line.

20. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where the operational amplifier has a feedback circuit connected to the positive input.

21. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where the potentiometer circuit is adjusted using an adjusting method to maintain approximately identical voltage of electrodes having current measured and electrodes not having current measured.

22. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where the capacitor value is approximately 5 to 20 picofarads.

23. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where an adjusting method for the potentiometer circuit is selected from the group consisting of manual adjustment before assembling and software adjustment using computer software and a measurement and feedback circuit having a digital to analog converter and the analog to digital converter.

24. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where the electrode settling period is approximately 10 to 600 microseconds.

25. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where the steady state period is approximately 4 to 60 seconds.

26. The process for reading electrical current of electrodes on a microarray of electrodes of claim 15, where the measurement time is approximately 0.5 to 5 milliseconds.

27. A process for reading electrical current of electrodes on a microarray of electrodes comprising the steps of:

(a) providing a measurement system having a control system, an integration circuit, a microarray chamber, a plurality of voltage lines, an analog to digital converter, digital circuitry, and analog circuitry, where the analog circuitry includes the integration circuit, where the analog to digital converter transfers the output of the analog circuitry to the digital circuitry, where the digital circuitry is separate from the analog circuitry and includes the control system, where the control system, the integration circuit, and the microarray chamber are in circuit communication, where the microarray chamber contains a microarray having a plurality of electrodes in circuit communication with the control system and the integration circuit, where the voltage lines are switchably connectable to each electrode by the control system, where the integration circuit has a capacitance value, where the integration circuit has an integrating transimpedance amplifier having a positive input and a potentiometer circuit connected to the positive input via an operational amplifier;

(b) initializing measurement by setting a measurement set of the electrodes to approximately ground, setting a counter electrode voltage of at least one counter electrode, and pausing for a steady state period, where the at least one counter electrode is in fluid communication with the measurement set of the electrodes;

(c) measuring the current for each electrode of the measurement set of electrodes current by (i) using a first voltage line a to connect connecting a measurement electrode to the integration circuit, the integration circuit where the reset switch is in the closed position, (ii) pausing for an electrode settling period, (iii) opening the reset switch to measure and record a voltage response from the output of the integration circuit for a measurement time at a sampling rate, (iv) closing the reset switch, and (v) switching the measurement electrode back to a second voltage line; and

(d) calculating the current of each of the electrodes of the measurement set, where calculating the current of each electrode is carried out using linear regression of the voltage response and measurement time, where the linear regression analysis results in a correlation between the voltage response and the measurement time, there the correlation has a slope, where the current is equal to the negative of the slope multiplied by the capacitor value.