Multipurpose analysis using second harmonic generating nanoprobes

• US 8,945,471 B2
• Filed: 01/20/2010
• Issued: 02/03/2015
• Est. Priority Date: 01/21/2009
• Status: Active Grant

• Current Assignee: California Institute of Technology
• Original Assignee: California Institute of Technology
• Inventors: Pantazis, Periklis, Masmanidis, Sotirios, Fraser, Scott E.
• Primary Examiner(s): Xu, Robert
• Application Number:
  US12/690,863
• Publication Number:
  US 20100233820A1
• Time in Patent Office: 1,840 Days
• Field of Search: None
• US Class Current: 422/82.05
• CPC Class Codes: B82Y 15/00 Nanotechnology for interacting, sensing or actuating, e.g. quantum dots as markers in protein assays or molecular motors
• CPC Class Codes: B82Y 20/00 Nanooptics, e.g. quantum optics or photonic crystals
• CPC Class Codes: C12Q 1/6818 involving interaction of two or more labels, e.g. resonant energy transfer
• CPC Class Codes: C12Q 2535/101 Sanger sequencing method, i.e. oligonucleotide sequencing using primer elongation and dideoxynucleotides as chain terminators
• CPC Class Codes: C12Q 2563/155 Particles of a defined size, e.g. nanoparticles
• CPC Class Codes: G01N 2021/6441 with two or more labels
• CPC Class Codes: G01N 21/636 using an arrangement of pump beam and probe beam; using the measurement of optical non-linear properties; non-linear optics per se G02F1/35
• CPC Class Codes: G01N 21/6428 Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" in vivo A61B5/00; immunoassay G01N33/53
• CPC Class Codes: G01N 21/6458 Fluorescence microscopy fluorescence microscopes per se G02B21/0076 and G02B21/16
• CPC Class Codes: G02F 1/37 for second-harmonic generation G02F1/3532 takes precedence
• CPC Class Codes: G02F 2202/36 Micro- or nanomaterials
• CPC Class Codes: Y10T 436/143333 Saccharide [e.g., DNA, etc.]

Abstract

Second harmonic nanoprobes for multipurpose imaging of samples and a method of using such probes to monitor nucleotide sequencing in a Multi-SHG Detection Imaging (MSDI) modality and to monitor external electric field using voltage sensitive second harmonic generating (SHG) nanoprobes are provided. The SHG nanoprobes are comprised of various kinds of nanocrystals that do not possess an inversion symmetry and therefore are capable of generating second harmonic signals that can then be detected by conventional two-photon microscopy for in vivo imaging of biological processes and structures such as cell signaling, neuroimaging, protein conformation probing, DNA conformation probing, gene transcription, virus infection and replication in cells, protein dynamics, tumor imaging and cancer therapy evaluation and diagnosis as well as quantification in optical imaging for a wide-range of biological and non-biological processes and devices.

Claims

1. A second harmonic generating (SHG) nanoprobe system for nucleotide sequencing comprising:

a plurality of distinct SHG nanoprobes, each of said distinct SHG nanoprobes having no inversion symmetry, the number of such distinct SHG nanoprobes being sufficient such that each distinct nucleotide type to be sequenced has a distinct SHG nanoprobe assigned thereto; and

an external excitation source for sequentially radiating each of a plurality of nucleotides to be sequenced over at least two distinct excitation wavelengths, wherein the SHG nanoprobes are selected such that the radiation generated by each of the SHG nanoprobes when said nanoprobes are excited at the at least two excitation wavelengths by the external excitation source creates an intensity ratio unique to each said distinct SHG nanoprobe when measured over at least two distinct emission wavelengths;

a detector configured to detect the sequential emissions of the plurality of distinct SHG nanoprobes at the at least Iwo distinct emission wavelengths; and

an analyzer for comparing the measured intensities from the sequential emissions at the at least two distinct emission wavelengths to determine a measured intensity ratio, and comparing said measured intensity ratio against a known standard for each of the distinct SHG nanoprobes, thereby sequentially determining each nucleotide in a target sequence.

2. The SHG nanoprobe system of claim 1, wherein each of the SHG nanoprobes is a nanocrystal selected from the group consisting of organic, inorganic and combinations thereof.

3. The SHG nanoprobe system of claim 2, wherein each of the nanocrystals is selected from the group consisting of BaTiO₃, SiC, ZnO, ZnS, ZnSe, ZnTe, CdS, CdSe, CdTe, GaAs, GaSb, GaP, GaN, InSb, LiNbO₃, KNbO₃, KTiOPO₄, Fe(IO₃)₃, Au, Ag, N-(4-nitrophenyl)-(L)-prolinol (NPP), urea, 4-Nitroaniline, 2-Methyl-4-nitroaniline (MNA), 3-Methyl-4-methoxy-4′

-nitrostilbene), β

-BaB₂O₄ (Beta-Barium Borate/BBO, LiB₃O₅ (Lithium Triborate/LBO), LiNbO3 (Lithium Niobate/LN), KTiOPO4 (Potassium Titanyl Phosphate/KTP), AgGaS₂ (Silver Thiogallate/AGS), AgGaSe₂ (Silver Gallium Selenide/AGSe), ZnGeP₂ (Zinc Germanium Phosphide/ZGP), GaSe (Gallium Selenide), KH₂PO₄ (Potassium Dihydrogen Phosphate/KDP), NH4H2PO4 (Ammonium Dihydrogen Phosphate (ADP), KD2PO4 (Deuterated Potassium Dihydroge Phosphate/DKDP), CsLiB₆O₁₀ (Cesium Lithium Borate/CLBO), KTiOAsO₄ (Potassium Titanyl Arsenate/KTA), KNbO₃ (Potassium Niobate/KN), LiTaO₃ (Lithium Tantalate/LT), RbTiOAsO4 (Rubidium Titanyl Arsenate/RTA), BaTiO₃ (Barium Titanate), MgBaF4 (Magnesium Barium Fluoride), GaAs (Gallium Arsenide), BiB₃O₆ (Bismuth Triborate/BIBO), K₂Al₂B₂O₇ (Potassium Aluminum Borate/KABO), KBe₂BO₃F₂ (Potassium Fluoroboratoberyllate/KBBF), BaAlBO₃F₂ (Barium Aluminum Fluoroborate/BABF), La₂CaB₁₀O₁₉ (Lanthanum Calcium Borate/LCB), GdCa₄O(BO₃)₃ (Gadolinium Calcium Oxyborate/GdCOB), YCa₄O (BO₃)₃ (Yttrium Calcium Oxyborate/YCOB), Li₂B₄O₇ (Lithium Tetraborate/LB₄), LiRbB₄O₇ (Lithium Rubidium Tetraborate/LRB₄), CdHg(SCN)₄ (Cadmium Mercury Thiocyanate/CMTC), RbTiOPO₄ (Rubidium Titanyl Phosphate/RTP), LiInS₂ (Lithium Thioindate/LIS), LiInSe₂ (Lithium Indium Selenide/LISe), KB₅O_8.4H₂O (Potassium Pentaborate Tetrahydrate/KB₅), CsB3O5 (Cesium Triborate/CBO), C₄H₇D₁₂N₄PO₇ (Deuterated L-Arginine Phosphate Monohydrate/DLAP), a-HIO₃ (a-Iodic Acid), LiCOOH.H₂O (Lithium Formate Monohydrate/LFM), CsH₂AsO₄ (Cesium Dihydrogen Arsenate/CDA), CsD₂AsO₄ (Deuterated Cesium Dihydrogen Arsenate/DCDA), RbH₂PO₄ (Rubidium Dihydrogen Phosphate/RDP), CsTiOAsO₄ (Cesium Titanyl Arsenate/CTA), Ba₂NaNb₅O₁₅ (Barium Sodium Niobate/BNN), K3Li2Nb5O15 (Potassium Lithium Niobate/KLN), CO(NH2)₂ (Urea), LiIO₃ (Lithium Iodate), Ag₃AsS₃ (Proustite), HgGa₂S₄ (Mercury Thiogallate), CdGeAs₂ (Cadmium Germanium Arsenide/CGA), Ti₃AsSe₃ (Thallium Arsenic Selenide/TAS), CdSe (Cadmium Selenide), ZnO (Zinc Oxide), ZnS (Zinc Sulfide), ZnSe (Zinc Selenide), ZnTe (Zinc Telluride), CdS (Cadmium Sulfide), SiC (Silicon Carbide), GaN (Gallium Nitride), GaSb (Gallium Antimonide).

4. The SHG nanoprobe system of claim 1, wherein each of the SHG nanoprobes include magneto-SHG particles selected from the group consisting of ferromagnetic, ferrimagnetic, paramagnetic, diamagnetic, superparamagnetic (i.e. Fe₃O₄), superdiamagnetic, and metamagentic superparamagnetic material.

5. The SHG nanoprobe system of claim 1, wherein each of the SHG nanoprobes are further be surrounded by a resonant material nanoshell, the nanoshell being formed from a material selected from the group consisting of gold, silver, copper, aluminum, palladium, or platinum.

6. The SHG nanoprobe system of claim 1, wherein each of the SHG nanoprobes is less than or equal to 10 μ

m.

7. The SHG nanoprobe system of claim 1, wherein the excitation source is selected from the group consisting of continuous wave, modulated and pulsed lasers.

8. The SHG nanoprobe system of claim 1, further comprising at least one exciter nanostructure, said exciter nanostructure designed to produce an enhanced local electrical field of a specified frequency when exposed to the excitation source, such that each of the SHG nanoprobes generate a second harmonic resonance emission when brought within range of the resonant electrical field of said exciter nanostructure.

9. The SHG nanoprobe system of claim 8, wherein the at east one exciter nanostructure is a metal nanostructure.

10. The SHG nanoprobe system of claim 9, wherein the metal nanostructure is a nanostructure selected from the group consisting of nanorods, nanospheres or nanoshells.

11. The SHG nanoprobe system of claim 10, wherein the metal nanostructure is made of gold, silver, copper, aluminum, palladium, or platinum.

12. The SHG nanoprobe system of claim 8, wherein each of the SHG nanoprobe and the emitter nanostructure are both attached to a single nucleotide of interest.

13. The SHG nanoprobe system of claim 8, wherein the exciter nanostructure is linked to a polymerase molecule used in the nucleotide sequencing process.

14. The SHG nanoprobe system of claim 8, wherein the exciter nanostructure is disposed on a surface of a detector used for detecting the distinct emissive fingerprints.

15. The SHG nanoprobe system of claim 1, wherein the SHG nanoprobes are functionalized such that the SHG nanoprobe may be attached to the nucleotide of interest.

16. The SHG nanoprobe system of claim 1, wherein the nucleotides are selected from the group consisting of double-stranded DNA, single-stranded DNA, DNA from plasmid, first strand cDNA, total genomic DNA, RNA, cut/end-modified DNA, in vitro transposon tagged DNA.

17. The SHG nanoprobe system of claim 1, wherein the SHG nanoprobes are voltage sensitive SHG nanoprobes, and where the external excitation source is an electric field having sufficient emissive strength to generate a harmonic emission in the SHG nanoprobes.