Elite event A5547-127 and methods and kits for identifying such event in biological samples
First Claim
Patent Images
1. A kit comprising a primer pair, one primer of said pair recognizing the 5′
- flanking region of A5547-127, and the other primer of said pair recognizing the foreign DNA contiguous with said 5′
flanking region, or one primer of said pair recognizing the 3′
flanking region of A5547-127 and the other primer of said pair recognizing the foreign DNA contiguous with said 3′
flanking region,wherein said 5′
flanking region comprises the nucleotide sequence of SEQ ID No 1 from nucleotide 1 to nucleotide 311, said 3′
flanking region comprising the nucleotide sequence of the complement of SEQ ID No 2 from nucleotide 510 to nucleotide 1880, wherein said foreign DNA contiguous with said 5′
flanking region comprises the nucleotide sequence of the complement of SEQ ID No. 1 from nucleotide 312 to nucleotide 810, and wherein said foreign DNA contiguous with said 3′
flanking region comprises the nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 509.
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Abstract
Tools are provided which allow rapid and unequivocal identification of elite event A5547-127 in biological samples.
303 Citations
17 Claims
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1. A kit comprising a primer pair, one primer of said pair recognizing the 5′
- flanking region of A5547-127, and the other primer of said pair recognizing the foreign DNA contiguous with said 5′
flanking region, or one primer of said pair recognizing the 3′
flanking region of A5547-127 and the other primer of said pair recognizing the foreign DNA contiguous with said 3′
flanking region,wherein said 5′
flanking region comprises the nucleotide sequence of SEQ ID No 1 from nucleotide 1 to nucleotide 311, said 3′
flanking region comprising the nucleotide sequence of the complement of SEQ ID No 2 from nucleotide 510 to nucleotide 1880, wherein said foreign DNA contiguous with said 5′
flanking region comprises the nucleotide sequence of the complement of SEQ ID No. 1 from nucleotide 312 to nucleotide 810, and wherein said foreign DNA contiguous with said 3′
flanking region comprises the nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 509. - View Dependent Claims (2, 3, 4)
- flanking region of A5547-127, and the other primer of said pair recognizing the foreign DNA contiguous with said 5′
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5. A primer pair comprising a first primer having a sequence which, under optimized PCR conditions specifically recognizes a sequence within the 5′
- flanking region of A5547-127, and a second primer which, under optimized PCR conditions specifically recognizes a sequence within the foreign DNA contiguous with said 5′
flanking region, or comprising a first primer which, under optimized PCR conditions specifically recognizes a sequence within the 3′
flanking region of A5547-127, and a second primer which, under optimized PCR conditions specifically recognizes a sequence within the foreign DNA contiguous with said 3′
flanking region, wherein said 5′
flanking region comprises the nucleotide sequence of SEQ ID No 1 from nucleotide 1 to nucleotide 311 and said 3′
flanking region having the nucleotide sequence of the complement of SEQ ID No 2 from nucleotide 510 to nucleotide 1880, said foreign DNA contiguous with said 5′
flanking region comprises the nucleotide sequence of the complement of SEQ ID No. 1 from nucleotide 312 to nucleotide 810, and said foreign DNA contiguous with said 3′
flanking region comprises the nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 509. - View Dependent Claims (6, 7)
- flanking region of A5547-127, and a second primer which, under optimized PCR conditions specifically recognizes a sequence within the foreign DNA contiguous with said 5′
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8. A primer pair comprising a first primer comprising at its extreme 3′
- end the sequence of SEQ ID No. 13, and a second primer comprising at its extreme 3′
end the sequence of SEQ ID No. 15.
- end the sequence of SEQ ID No. 13, and a second primer comprising at its extreme 3′
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9. A kit comprising a specific probe, capable of hybridizing specifically to a specific region of A5547-127, wherein said specific region is a DNA comprising part of the 5′
- flanking sequence of A5547-127 and the sequence of the foreign DNA contiguous therewith, or is a DNA comprising part of the 3′
flanking sequence of A5547-127 and the sequence of the foreign DNA contiguous therewith,wherein said 5′
flanking region comprises the nucleotide sequence of SEQ ID No 1 from nucleotide 1 to nucleotide 311, said 3′
flanking region comprising the nucleotide sequence of the complement of SEQ ID No 2 from nucleotide 510 to nucleotide 1880, wherein said foreign DNA contiguous with said 5′
flanking region comprises the nucleotide sequence of the complement of SEQ ID No. 1 from nucleotide 312 to nucleotide 810, and wherein said foreign DNA contiguous with said 3′
flanking region comprises the nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 509, or the complement of said sequences, andwherein the sequence of said specific probe has at least 80% sequence identity with SEQ ID No. 1 from nucleotide 260 to 360 or SEQ ID No. 2 from nucleotide 460 to 560, or the complement of said sequences.
- flanking sequence of A5547-127 and the sequence of the foreign DNA contiguous therewith, or is a DNA comprising part of the 3′
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10. A specific probe comprising a sequence which has at least 80% sequence identity with a sequence comprising part of the 5′
- or 3′
flanking sequence of A5547-127 and the sequence of the foreign DNA contiguous therewith, or the complement thereof,wherein said 5′
flanking region comprises the nucleotide sequence of SEQ ID No 1 from nucleotide 1 to nucleotide 311, said 3′
flanking region comprising the nucleotide sequence of the complement of SEQ ID No 2 from nucleotide 510 to nucleotide 1880, wherein said foreign DNA contiguous with said 5′
flanking region comprises the nucleotide sequence of the complement of SEQ ID No. 1 from nucleotide 312 to nucleotide 810, and wherein said foreign DNA contiguous with said 3′
flanking region comprises the nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 509, or the complement of said sequences,wherein the sequence of said specific probe has at least 80% sequence identity with SEQ ID No. 1 from nucleotide 260 to 360 or SEQ ID No. 2 from nucleotide 460 to 560, or the complement of said sequences.
- or 3′
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11. A specific probe comprising the nucleotide sequence of SEQ ID No. 1 from nucleotide 260 to 360 or of SEQ ID No. 2 from nucleotide 460 to 560, or the complement of said sequences.
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12. A DNA comprising the 5′
- flanking region of the A5547-127 event and the foreign DNA contiguous therewith, wherein said DNA comprises a sequence of between 50 and 500 bp with at least 80% sequence identity to a DNA comprising the 5′
flanking region of the A5547-127 event and the foreign DNA contiguous therewith, said 5′
flanking region comprising the nucleotide sequence of SEQ ID No 1 from nucleotide 1 to nucleotide 311, and said foreign DNA contiguous therewith comprising the nucleotide sequence of SEQ ID No. 1 from nucleotide 312 to nucleotide 810;
wherein said DNA comprises the sequence of SEQ ID No. 1 from nucleotide 260 to nucleotide 360.
- flanking region of the A5547-127 event and the foreign DNA contiguous therewith, wherein said DNA comprises a sequence of between 50 and 500 bp with at least 80% sequence identity to a DNA comprising the 5′
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13. A DNA comprising the 3′
- flanking region of the A5547-127 event and the foreign DNA contiguous therewith,
wherein said DNA comprises a sequence with at least 80% sequence identity to a DNA comprising the 3′
flanking region of the A5547-127 event and the foreign DNA contiguous therewith, said 3′
flanking region comprising the nucleotide sequence of SEQ ID No 2 from nucleotide 510 to nucleotide 1880, and said foreign DNA contiguous therewith comprising the nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 509;wherein said DNA contains the nucleotide sequence of SEQ ID No. 1 from nucleotide position 460 to nucleotide position 560.
- flanking region of the A5547-127 event and the foreign DNA contiguous therewith,
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14. An isolated DNA comprising a nucleotide sequence with at least 95% sequence identity to the nucleotide sequence of SEQ ID No 1 from nucleotide 260 to nucleotide 360.
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15. An isolated DNA comprising a nucleotide sequence with at least 95% sequence identity to the nucleotide sequence of SEQ ID No 2 from nucleotide 460 to nucleotide 560.
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16. An isolated DNA comprising the nucleotide sequence of SEQ ID No 1 from nucleotide 260 to nucleotide 360.
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17. An isolated DNA comprising the nucleotide sequence of SEQ ID No 2 from nucleotide 460 to nucleotide 560.
Specification