Glycolic acid production by fermentation from renewable resources

• US 9,034,615 B2
• Filed: 06/07/2007
• Issued: 05/19/2015
• Est. Priority Date: 06/09/2006
• Status: Active Grant

• Current Assignee: Metabolic Explorer
• Original Assignee: Metabolic Explorer
• Inventors: Soucaille, Philippe
• Primary Examiner(s): Chen, Shin Lin
• Application Number:
  US12/302,730
• Publication Number:
  US 20090155867A1
• Time in Patent Office: 2,903 Days
• Field of Search: 435/135, 435/146, 424/93.2
• US Class Current: 435/146
• CPC Class Codes: C07H 3/02 Monosaccharides
• CPC Class Codes: C07K 14/195 from bacteria
• CPC Class Codes: C12N 15/70 Vectors or expression systems specially adapted for E. coli
• CPC Class Codes: C12P 7/42 Hydroxy-carboxylic acids
• CPC Class Codes: C12P 7/62 Carboxylic acid esters

Abstract

The present invention provides a method for the biological production of glycolic acid from a fermentable carbon source in a microorganism. In one aspect of the present invention, a process for the conversion of glucose to glycolic acid is achieved by the use of a recombinant organism comprising a host E. coli transformed i) to attenuate the glyoxylate consuming pathways to other compounds than glycolate ii) to use an NADPH glyoxylate reductase to convert glyoxylate to glycolate iii) to attenuate the level of all the glycolate metabolizing enzymes and iv) increase the flux in the glyoxylate pathway. In another aspect of the present invention, the process for the production of glycolic acid from a fermentable carbon source, using a recombinant E. coli, is improved by increasing the NADPH availability in the cells. Optionally the glycolic acid produced can be purified through a step of polymerization to at least glycolic acid dimers and recovered by depolymerization from glycolic acid dimers, oligomers and/or polymers.

Claims

1. A method for the fermentative production of glycolic acid (glycolate), the method comprising:

culturing a strain of Escherichia coli (E. coli) in an appropriate culture medium comprising a fermentable source of carbon, the culturing comprising;

a) fermenting the strain of E. coli to produce glycolic acid by converting the fermentable source of carbon into glycolic acid,

b) concentrating the glycolic acid in the strain of E. coli or in the medium, and

c) recovering the glycolic acid from the culture medium;

wherein the fermentable source of carbon is glucose; and

wherein the strain of E. coli comprises;

a modification that attenuates the expression of at least one gene selected from the group consisting of;

aceB encoding malate synthase,

glcB encoding the second malate synthase, and

gcl encoding glyoxylate carboligase; and

a modification that increases the expression of a ycdW or a yiaE gene encoding a polypeptide with NADPH dependent glyoxylate reductase activity that catalyzes the conversion of glyoxylate to glycolate.

2. The method as claimed in claim 1, wherein the ycdW or yiaE gene is endogenous.

3. The method as claimed in claim 1, wherein the modification increases the expression of the ycdW gene.

4. The method as claimed in claim 1, wherein the strain of E. coli comprises modifications that attenuate the expression of aceB encoding malate synthase, glcB encoding the second malate synthase, and gcl encoding glyoxylate carboligase.

5. The method as claimed in claim 4, wherein the modification increases the expression of the ycdW gene.

6. The method as claimed in claim 5, wherein the strain of E. coli is MG1655.

7. The method as claimed in claim 1, wherein the strain of E. coli is further modified by attenuating the expression of at least one gene selected from the group consisting of:

glcDEF encoding glycolate oxidase, and

aldA encoding glycoaldehyde dehydrogenase.

8. The method as claimed in claim 1, wherein the strain of E. coli is further transformed to increase the glyoxylate pathway flux, by:

attenuating the activity of the enzyme isocitrate dehydrogenase;

attenuating the expression of at least one gene selected from the group consisting of;

pta encoding phospho-transacetylase,

ack encoding acetate kinase, and

poxB encoding pyruvate oxidase;

or

increasing the activity of aceA.

9. The method as claimed in claim 8, wherein the activity of aceA is increased by attenuating the expression of the genes iclR or fadR.

10. The method as claimed in claim 1 wherein the availability of NADPH is increased.

11. The method as claimed in claim 10 wherein the strain of E. coli further comprises a modification that attenuates the expression of at least one gene selected from the group consisting of:

pgi encoding the glucose-6-phosphate isomerase,

udhA encoding the soluble transhydrogenase, and

edd encoding phosphogluconate dehydratase.

12. The method as claimed in claim 1, wherein glycolate is recovered through a step of depolymerization of glycolate dimers.

13. The method as claimed in claim 1, wherein glycolate is recovered by depolymerization from at least one of glycolate dimers, oligomers and polymers.

14. The method as claimed in claim 1, wherein the strain of E. coli comprises modifications that attenuate the expression of aceB encoding malate synthase and gcl encoding glyoxylate carboligase, and the modification that increases the expression of the ycdW or the yiaE gene, and further comprises modifications that attenuate the expression of glcDEF encoding glycolate oxidase, and aldA encoding glycoaldehyde dehydrogenase.

15. The method as claimed in claim 14, wherein the strain of E. coli is further transformed to increase the glyoxylate pathway flux, by:

attenuating the activity of the enzyme isocitrate dehydrogenase;

attenuating the expression of at least one gene selected from the group consisting of;

pta encoding phospho-transacetylase,

ack encoding acetate kinase, and

poxB encoding pyruvate oxidase;

or

increasing the activity of aceA.

16. The method as claimed in claim 15, wherein the activity of aceA is increased by attenuating the expression of the genes iclR or fadR.

17. The method as claimed in claim 16, wherein the strain of E. coli further comprises a modification that attenuates the expression of at least one gene selected from the group consisting of:

pgi encoding the glucose-6-phosphate isomerase,

udhA encoding the soluble transhydrogenase, and

edd encoding phosphogluconate dehydratase.

18. The method as claimed in claim 17, wherein the strain of E. coli comprises a modification that increases the expression of the ycdW gene.

19. The method as claimed in claim 18, wherein the strain of E. coli is MG1655.

20. The method as claimed in claim 15, wherein the strain of E. coli comprises a modification that increases the expression of the ycdW gene.

21. The method as claimed in claim 20, wherein the strain of E. coli is MG1655.

22. The method as claimed in claim 15, wherein the strain of E. coli further comprises a modification that attenuates the expression of iclR gene.

23. The method as claimed in claim 22, wherein the strain of E. coli comprises a modification that increases the expression of the ycdW gene.

24. The method of claim 23, wherein the strain of E. coli is MG1655.

25. The method as claimed in claim 22, wherein the strain of E. coli further comprises a modification that attenuates the expression of edd and eda genes.

26. The method as claimed in claim 25, wherein the strain of E. coli comprises a modification that increases the expression of the ycdW gene.

27. The method as claimed in claim 26, wherein the strain of E. coli is MG1655.

28. The method as claimed in claim 25, wherein the strain of E. coli further comprises a modification that attenuates the expression of pgi gene encoding the glucose-6-phosphate isomerase.

29. The method as claimed in claim 28, wherein the strain of E. coli comprises a modification that increases the expression of the ycdW gene.

30. The method as claimed in claim 28, wherein the strain of E. coli is MG1655.

31. The method as claimed in claim 28, wherein the strain of E. coli further comprises a modification that attenuates the expression of udhA gene encoding the soluble transhydrogenase.

32. The method as claimed in claim 31, wherein the strain of E. coli comprises a modification that increases the expression of the ycdW gene.

33. The method as claimed in claim 32, wherein the strain of E. coli is MG1655.