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Targeted rolling circle amplification

  • US 9,290,800 B2
  • Filed: 03/13/2014
  • Issued: 03/22/2016
  • Est. Priority Date: 03/15/2013
  • Status: Active Grant
First Claim
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1. A method of amplifying a nucleic acid target region, the method comprising:

  • a) providing a nucleic acid template, which template is a circular nucleic acid having a double-stranded central region and two single-stranded hairpin end regions;

    wherein the double-stranded central region comprises a first polynucleotide sequence and a second polynucleotide sequence complementary to the first polynucleotide sequence, which first and second polynucleotide sequences collectively comprise the target region, a recognition site for a first restriction endonuclease, and a recognition site for a second restriction endonuclease, which recognition sites flank the target region; and

    wherein the circular nucleic acid comprises a first primer binding sequence;

    b) binding a first primer to the first primer binding sequence;

    c) performing polymerase-mediated template-directed primer extension of the first primer with a polymerase comprising strand displacement activity, thereby producing a first nucleic acid product comprising at least two copies of the first polynucleotide sequence and the second polynucleotide sequence, at least one copy of each of which is not base paired to the template;

    d) digesting the first product with the first and second restriction endonucleases and releasing at least one first product fragment having a double-stranded region that comprises the target region, ande) ligating a first hairpin adapter to one end of the first product fragment and ligating a second hairpin adapter to the other end of the first product fragment, thereby producing at least one first circular progeny nucleic acid.

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