Method of improving the resolution of compounds eluted from a chromatography device

• US 9,395,341 B2
• Filed: 12/20/2013
• Issued: 07/19/2016
• Est. Priority Date: 08/26/2009
• Status: Active Grant

• Current Assignee: Thermo Fisher Scientific (Bremen) GmbH (Thermo Fisher Scientific Incorporated)
• Original Assignee: Thermo Fisher Scientific (Bremen) GmbH (Thermo Fisher Scientific Incorporated)
• Inventors: Pfaff, Hans
• Primary Examiner(s): Toatley, Gregory J
• Assistant Examiner(s): SUAREZ, FELIX E
• Application Number:
  US14/137,787
• Publication Number:
  US 20140114586A1
• Time in Patent Office: 942 Days
• Field of Search: 702/19, 702/23, 702/25, 702/28, 702/179, 702/180, 702/183, 73/232.7, 250/287
• US Class Current: 1/1
• CPC Class Codes: G01N 30/02 Column chromatography
• CPC Class Codes: G01N 30/72 Mass spectrometers mass spectrometers per se H01J49/00
• CPC Class Codes: G01N 30/74 Optical detectors measurement of intensity, velocity, spectral content, polarisation, or phase of infrared, visible or ultraviolet light G01J
• CPC Class Codes: G01N 30/8624 Detection of slopes or peaks; baseline correction
• CPC Class Codes: G01N 30/8631 Peaks
• CPC Class Codes: G01N 30/8637 Peak shape
• CPC Class Codes: G01N 30/8675 Evaluation, i.e. decoding of the signal into analytical information for analysis of specific compounds see also G01N30/88 and subgroups of G01N33/00; chemical libraries per se C40B

Abstract

A method of and apparatus for improving the resolution of compounds eluted from a separation device are disclosed, particularly suited for use in the fields of gas or liquid chromatography. Embodiments of the invention provide that spectroscopic data are measured from an effluent eluted from a chromatography device as a function of elution time; peaks in intensity are identified to form a first set of identified peaks; peaks not due to an eluting compound are discarded from the first set of identified peaks thereby forming a second set of identified peaks from those retained; each peak in the second set of peaks is transformed into a first model peak centered on the elution time of each peak in the second set of peaks; some or all the model peaks created are added together to create a new chromatogram; and all identified peaks in intensity in the second set of peaks having elution times within a given time period of identified peaks in intensity in the new chromatogram are grouped together and assigned to a single eluted compound thereby forming a processed data set.

Claims

1. A method of improving the resolution of compounds eluted from a chromatography device comprising:

(a) using a spectrometer to measure spectroscopic data from an effluent eluted from a chromatography device as a function of elution time, the effluent containing eluted compounds;

(b) using a processor to identify peaks in intensity in the spectral domain and collecting signal intensities within a spectroscopic window to form a sparse dataset;

(c) using a processor to identify at least some peaks in intensity as a function of time in the chromatographic domain from the sparse dataset to form a first set of identified peaks;

(d) removing, using a processor, from the first set of identified peaks those peaks that are not due to an eluted compound on the basis of a match between the shape of the identified peak and a model peak shape, on the basis of the intensity of the identified peak above a local background of the spectroscopic data, or any combination thereof thereby forming a second set of identified peaks from those retained;

(e) tabulating peak parameters for the second set of identified peaks, the peak parameters including mass, intensity, centroid elution time, peak factor, correlation factor, or any combination thereof;

(f) grouping together identified peaks in intensity in the second set of peaks having elution times within a given time period of identified peaks in intensity and assigning them to a single eluted compound thereby forming a processed data set; and

(g) comparing the processed data set to the measured spectroscopic data to identify isotopic peaks.

2. A method according to claim 1 wherein removing peaks in step (d) is further based on a factor relating to the noise in the measured spectroscopic data.

3. A method according to claim 1 wherein the model peak shape is determined based on the variation of the determined positions in the chromatographic dimension for peaks know to be related to one another.

4. A method according to claim 1 wherein the model peak shape is determined based on an average measured peak shape.

5. A method according to claim 1 wherein a peak factor is determined for each identified peak of the measured spectroscopic quantities, the peak factor being representative of the intensity of the peak above the local background, and the peak factor (PF) is a function of:

(i) the intensity of the identified peak, and (ii) at least one of;

a noise on the measured spectroscopic quantity in the vicinity of the identified peak, and, the intensity of one or more minima in the vicinity of the identified peak.

6. The method of claim 1 wherein the model peak shape is based upon one or more of:

a Gaussian peak shape, a bell-shaped peak shape, a Lorentzian peak shape, a parabolic peak shape or a triangular peak shape and has a full width at half height (FWHH) which is a linear function of the elution time at which the identified peak occurred.

7. A method according to claim 1 wherein the correlation factors are determined between each of the identified peaks of the measured spectroscopic quantities and a model peak shape, the correlation factor being representative of the match between the shape of the identified peak and the model peak shape, the correlation factor (CF) being a function of the intensities of the identified peak and the model peak shape at a plurality of points.

8. A method according to claim 1 wherein the measured spectroscopic data have spikes removed in step (c).

9. A method according to claim 1 wherein the measured spectroscopic data are smoothed before step (d).

10. A method according to claim 1 wherein the given time period in step (f) is a function of the uncertainty of the measured spectroscopic data in the time domain.

11. A method according to claim 1 wherein the given time period in step (f) is a function of the difference in the measured elution times of isotopes of the same molecular species.

12. A method according to claim 1 wherein the measured spectroscopic data are mass spectra.

13. A method according to claim 1 wherein the chromatography device comprises a liquid chromatograph.

14. A system for resolving compounds eluted from a chromatography device comprising:

a spectrometer configured to;

measure spectroscopic data from an effluent eluted from a chromatography device as a function of elution time, the effluent containing eluted compounds; and

discard portions of the spectroscopic data that does not qualify as a peak candidate to create a sparse data set;

a data analysis device coupled to the spectrometer configured to;

receive the sparse data set from the spectrometer;

identify at least some peaks in intensity in at least some of the sparse data set to form a first set of identified peaks;

remove from the first set of identified peaks those peaks that are not due to an eluted compound on the basis of a match between the shape of the identified peak and a model peak shape, on the basis of the intensity of the identified peak above a local background of the spectroscopic data, or any combination thereof thereby forming a second set of identified peaks from those retained;

tabulating peak parameters for the second set of peaks, the peak parameters including mass, intensity, centroid elution time, peak factor, correlation factor, or any combination thereof;

grouping together identified peaks in intensity in the second set of peaks having elution times within a given time period of identified peaks and assigning them to a single eluted compound thereby forming a processed data set.

15. A system according to claim 14 wherein the width of the model peaks are determined based on a determined spectroscopic or chromatographic precision.

16. A system according to claim 15 wherein the spectroscopic or chromatographic precision is determined from observation of the variation of the determined positions in the chromatographic dimension for peaks which are known to be related to one another such that they should appear in the same position.

17. A system according to claim 15 wherein the width of the model peaks are a function of the elution time.

18. A system according to claim 14 wherein the data analysis device is configured to remove peaks based additionally on a factor relating to the noise in the measured spectroscopic data.

19. A system according to claim 14 wherein the data analysis device is configured to determine the model peak shape from the variation of the determined positions in the chromatographic dimension for peaks known to be related to one another.

20. A system according to claim 14 wherein the data analysis device is further configured to determine the model peak shape from an average measured peak shape.