Alcohol dehydrogenases (ADH) useful for fermentive production of lower alkyl alcohols

• US 9,410,166 B2
• Filed: 05/20/2014
• Issued: 08/09/2016
• Est. Priority Date: 12/29/2009
• Status: Active Grant

• Current Assignee: Gevo Incorporated
• Original Assignee: Butamax Advanced Biofuels LLC (International Flavors & Fragrances Incorporated)
• Inventors: Satagopan, Sriram, O'Keefe, Daniel P., Gude, Janardhan
• Primary Examiner(s): Rao, Manjunath
• Assistant Examiner(s): Moore, William W
• Application Number:
  US14/282,722
• Publication Number:
  US 20140377824A1
• Time in Patent Office: 812 Days
• Field of Search: None
• US Class Current: 1/1
• CPC Class Codes: C12N 15/81 for yeasts
• CPC Class Codes: C12N 9/0004 Oxidoreductases (1.)
• CPC Class Codes: C12P 7/16 Butanols
• CPC Class Codes: Y02E 50/10 Biofuels, e.g. bio-diesel
• CPC Class Codes: Y02P 20/52 using catalysts, e.g. selective catalysts

Abstract

The invention relates to suitable candidate alcohol dehydrogenase (ADH) enzymes for production of lower alkyl alcohols including isobutanol. The invention also relates to recombinant host cells that comprise such ADH enzymes and methods for producing lower alkyl alcohols in the same.

Claims

1. A recombinant microbial host cell comprising a biosynthetic pathway for production of isobutanol, the biosynthetic pathway comprising a substrate to product conversion catalyzed by a polypeptide with alcohol dehydrogenase activity, wherein the polypeptide with alcohol dehydrogenase activity has at least 90% identity to the amino acid sequence of SEQ ID NO:

36 and a K_I value for isobutanol that is higher relative to a control polypeptide having the amino acid sequence of SEQ ID NO;

26.

2. The recombinant microbial host cell of claim 1, wherein the polypeptide with alcohol dehydrogenase activity has at least 95% identity to the amino acid sequence of SEQ ID NO:

36.

3. The recombinant microbial host cell of claim 1, wherein the polypeptide with alcohol dehydrogenase activity has the amino acid sequence of SEQ ID NO:

36.

4. The recombinant host cell of claim 1, wherein the polypeptide with alcohol dehydrogenase activity is encoded by a polynucleotide having at least 85% identity to the nucleotide sequence of SEQ ID NO:

16.

5. The recombinant microbial host cell of claim 1, wherein the polypeptide with alcohol dehydrogenase activity uses NADH as a cofactor.

6. The recombinant microbial host cell of claim 1, wherein the polypeptide having alcohol dehydrogenase activity catalyzes the conversion of isobutyraldehyde to isobutanol in the presence of isobutanol at a concentration of 15 g/L.

7. The recombinant microbial host cell of claim 1, wherein the biosynthetic pathway for production of isobutanol comprises heterologous polynucleotides encoding polypeptides that catalyze substrate to product conversions for each step of the following steps:

(a) pyruvate to acetolactate;

(b) acetolactate to 2,3-dihydroxyisovalerate;

(c) 2,3-dihydroxyisovalerate to α

-ketoisovalerate;

(d) α

-ketoisovalerate to isobutyraldehyde; and

(e) isobutyraldehyde to isobutanol;

wherein the substrate to product conversion of step (e) is catalyzed by the polypeptide with alcohol dehydrogenase activity of claim 1 and the microbial host cell produces isobutanol.

8. The recombinant microbial host cell of claim 1, wherein the biosynthetic pathway for production of isobutanol comprises heterologous polynucleotides encoding polypeptides that catalyze substrate to product conversions for each step of the following steps:

(a) pyruvate to acetolactate;

(b) acetolactate to 2,3-dihydroxyisovalerate;

(c) 2,3-dihydroxyisovalerate to α

-ketoisovalerate;

(d) α

-ketoisovalerate to isobutyryl-CoA;

(e) isobutyryl-CoA to isobutyraldehyde; and

(f) isobutyraldehyde to isobutanol;

wherein the substrate to product conversion of step (e) is catalyzed by the polypeptide with alcohol dehydrogenase activity of claim 1 and the microbial host cell produces isobutanol.

9. The recombinant microbial host cell of claim 1, wherein the biosynthetic pathway for production of isobutanol comprises heterologous polynucleotides encoding polypeptides that catalyze substrate to product conversions for each step of the following steps:

(a) pyruvate to acetolactate;

(b) acetolactate to 2,3-dihydroxyisovalerate;

(c) 2,3-dihydroxyisovalerate to α

-ketoisovalerate;

(d) α

-ketoisovalerate to valine;

(e) valine to isobutylamine;

(f) isobutylamine to isobutyraldehyde; and

(g) isobutyraldehyde to isobutanol;

wherein the substrate to product conversion of step (e) is catalyzed by the polypeptide with alcohol dehydrogenase activity of claim 1 and the microbial host cell produces isobutanol.

10. The recombinant host cell of claim 1, wherein the genus of the host cell is selected from the group consisting of:

Saccharomyces, Pichia, Hansenula, Yarrowia, Aspergillus, Kluyveromyces, Pachysolen, Rhodotorula, Zygosaccharomyces, Galactomyces, Torulaspora, Schizosaccharomyces, Debayomyces, Williopsis, Dekkera, Kloeckera, Metschnikowia, Issatchenkia, and Candida.

11. A method for producing isobutanol comprising:

(a) providing a recombinant microbial host cell comprising an isobutanol biosynthetic pathway, the pathway comprising a heterologous polypeptide which catalyzes the substrate to product conversion of isobutyraldehyde to isobutanol wherein the polypeptide has at least 90% identity to the amino acid sequence of SEQ ID NO;

36 and a K_I value for isobutanol that is higher relative to a control polypeptide having the amino acid sequence of SEQ ID NO;

26,

and

(b) contacting the host cell of (a) with a carbon substrate under conditions whereby isobutanol is produced.

12. The method of claim 11, wherein the heterologous polypeptide which catalyzes the substrate to product conversion of isobutyraldehyde to isobutanol has at least 95% identity to the amino acid sequence of SEQ ID NO:

36.

13. The method of claim 11, wherein the heterologous polypeptide which catalyzes the substrate to product conversion of isobutyraldehyde to isobutanol has the amino acid sequence of SEQ ID NO:

36.