Global proteomic screening of random bead arrays using mass spectrometry imaging
First Claim
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1. A method of detecting the interaction of prey molecules with bait molecules on an array of beads, comprising:
- a. providing i) a mixture comprising first and second beads, said first beads comprising first bait molecules, said second beads comprising second bait molecules, wherein said first and second bait molecules are different; and
ii) prey molecules, wherein said prey molecules comprise a detectable label;
b. contacting said first and second beads with a solution comprising a population of said prey molecules under conditions wherein said prey molecules can bind to a bait molecule;
c. making a random array with said beads by depositing a mixture of said first and second beads onto a solid surface;
d. imaging said beads in said array for the presence of said detectable label to detect interaction of prey molecules with bait molecules; and
e. subjecting said array directly to mass spectrometry measurements under conditions such that one or more individual beads detected by the imaging in step d) are also detected in the same location within the array by said mass spectrometry measurements, wherein said mass spectrometry measurements detect said bait molecules or fragments thereof from said individual beads, individually resolving said beads and allowing identification of said beads in said imaged array.
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Abstract
Methods for proteomic screening on random protein-bead arrays by mass spec is described. Photocleavable mass tags are utilized to code a protein library (bait molecules) displayed on beads randomly arrayed in an array substrate. A library of probes (prey) can be mixed with the protein-bead array to query the array. Because mass spec can detect multiple mass tags, it is possible to rapidly identify all of the interactions resulting from this mixing.
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Citations
14 Claims
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1. A method of detecting the interaction of prey molecules with bait molecules on an array of beads, comprising:
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a. providing i) a mixture comprising first and second beads, said first beads comprising first bait molecules, said second beads comprising second bait molecules, wherein said first and second bait molecules are different; and
ii) prey molecules, wherein said prey molecules comprise a detectable label;b. contacting said first and second beads with a solution comprising a population of said prey molecules under conditions wherein said prey molecules can bind to a bait molecule; c. making a random array with said beads by depositing a mixture of said first and second beads onto a solid surface; d. imaging said beads in said array for the presence of said detectable label to detect interaction of prey molecules with bait molecules; and e. subjecting said array directly to mass spectrometry measurements under conditions such that one or more individual beads detected by the imaging in step d) are also detected in the same location within the array by said mass spectrometry measurements, wherein said mass spectrometry measurements detect said bait molecules or fragments thereof from said individual beads, individually resolving said beads and allowing identification of said beads in said imaged array. - View Dependent Claims (2, 3, 4, 5, 6, 7)
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8. A method of detecting the interaction of prey molecules with bait molecules on an array of beads, comprising:
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a. providing i) a mixture comprising first and second beads, said first beads comprising first bait molecules, said second beads comprising second bait molecules, wherein said first and second bait molecules are different;
ii) prey molecules; and
iii) detectable labels capable of being coupled to said prey molecules;b. contacting said first and second beads with a first solution comprising a population of said prey molecules; c. contacting said first and second beads with a second solution comprising said detectable labels; d. making a random array with said beads by depositing a mixture of said first and second beads onto a solid surface; e. imaging said beads in said array for the presence of said detectable labels; and f. subjecting said array directly to mass spectrometry measurements under conditions such that one or more individual beads detected by the imaging in step e) are also detected in the same location within the array by said mass spectrometry measurements, wherein said mass spectrometry measurements detect said bait molecules or fragments thereof from said individual beads, individually resolving said beads and allowing identification of said beads in said imaged array. - View Dependent Claims (9, 10, 11, 12)
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13. A method of making and decoding an array, comprising:
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a) providing i) a mixture comprising first and second beads, said first beads comprising first bait molecules, said second beads comprising second bait molecules, wherein said first and second bait molecules are different, and wherein at least one of said first and second beads comprises a detectable label; and
ii) a surface;b) making a random array of said beads by depositing a mixture of said first and second beads on said surface; c) imaging said array to detect the presence of said detectable label; and d) subjecting said array directly to mass spectrometry analysis under conditions wherein the identity of said bait on at least a portion of said beads is determined by said mass spectrometry analysis of said bait or fragments thereof, wherein said mass spectrometry measurements detect individually resolved beads, and wherein at least a portion of individual beads identified by said mass spectrometry analysis are also detected in the same location within the array by said imaging in step c). - View Dependent Claims (14)
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Specification