Method and system for performing multi-bone segmentation in imaging data
First Claim
1. A computer implemented method for performing bone segmentation in imaging data of a section of a body structure, the method comprising:
- Using a processor,Obtaining the imaging data including a plurality of 2D images of the section of the body structure; and
Performing a multiphase local-based hybrid level set segmentation on at least a subset of the plurality of 2D images by minimizing an energy functional including a local-based edge term and a local-based region term computed locally inside a local neighborhood centered at each pixel of each one of the 2D images on which the multiphase local-based hybrid level set segmentation is performed, the local neighborhood being defined by a Gaussian kernel whose size is determined by a scale parameter (σ
);
Generating a 3D volume including a plurality of 3D subvolumes from the segmented blobs of the secondary segmented image data; and
Associating an anatomical component to each one of the 3D subvolumes using the anatomical knowledge data relative to thesection of the body structure of the imaging data.
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Abstract
A computer implemented method for performing bone segmentation in imaging data of a section of a body structure is provided. The method includes: Obtaining the imaging data including a plurality of 2D images of the section of the body structure; and performing a multiphase local-based hybrid level set segmentation on at least a subset of the plurality of 2D images by minimizing an energy functional including a local-based edge term and a local-based region term computed locally inside a local neighborhood centered at each pixel of each one of the 2D images on which the multiphase local-based hybrid level set segmentation is performed, the local neighborhood being defined by a Gaussian kernel whose size is determined by a scale parameter (σ).
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Citations
23 Claims
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1. A computer implemented method for performing bone segmentation in imaging data of a section of a body structure, the method comprising:
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Using a processor, Obtaining the imaging data including a plurality of 2D images of the section of the body structure; and Performing a multiphase local-based hybrid level set segmentation on at least a subset of the plurality of 2D images by minimizing an energy functional including a local-based edge term and a local-based region term computed locally inside a local neighborhood centered at each pixel of each one of the 2D images on which the multiphase local-based hybrid level set segmentation is performed, the local neighborhood being defined by a Gaussian kernel whose size is determined by a scale parameter (σ
);Generating a 3D volume including a plurality of 3D subvolumes from the segmented blobs of the secondary segmented image data; and Associating an anatomical component to each one of the 3D subvolumes using the anatomical knowledge data relative to the section of the body structure of the imaging data. - View Dependent Claims (2, 3, 4, 5)
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6. A computer implemented method for performing bone segmentation in imaging data of at least a section of a body structure including a plurality of bones using anatomical knowledge data relative to the section of the body structure of the imaging data, the method comprising:
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Obtaining the imaging data including a plurality of 2D images of the section of the body structure; Generating primary image data from the imaging data using an image preprocessing including identifying regions of interest (ROIs) in the 2D images; Generating secondary segmented image data including a plurality of 2D binary images with segmented blobs by performing a multiphase local-based hybrid level set segmentation on the regions of interest (ROIs) by minimizing an energy functional including a local-based edge term and a local-based region term computed locally inside a local neighborhood centered at each point of a respective one of the regions of interest (ROIs), the local neighborhood being defined by a Gaussian kernel; Generating a 3D volume including a plurality of 3D subvolumes from the segmented blobs of the secondary segmented image data; and Associating an anatomical component to each one of the 3D subvolumes using the anatomical knowledge data relative to the section of the body structure of the imaging data. - View Dependent Claims (7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22)
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23. A system for generating segmentation data segmentation from imaging data of at least a section of a body structure including a plurality of bones using anatomical knowledge data relative to the section of the body structure of the imaging data, the system comprising:
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a processing unit having a processor and a memory; an image preprocessing module stored on the memory and executable by the processor, the image preprocessing module having program code that when executed, generates primary image data from the imaging data using an image preprocessing process, the primary image data including regions of interest in images of the imaging data; a multi-bone segmentation module stored on the memory and executable by the processor, the multi-bone segmentation module having a program code that when executed, generates a 3D volume by performing a multiphase local-based hybrid level set segmentation to obtain a plurality of segmented blobs and combining the segmented blobs to obtain the 3D volume including a plurality of 3D subvolumes, the multiphase local-based hybrid level set segmentation being carried out on each one of on the regions of interest (ROIs) by minimizing an energy functional including a local-based edge term and a local-based region term computed locally inside a local neighborhood centered at each point of a respective one of the regions of interest (ROIs), the local neighborhood being defined by a Gaussian kernel and generating a 3D volume following the multiphase local-based hybrid level set segmentation; and an anatomical component identification module stored on the memory and executable by the processor, the anatomical component identification module having a program code that, when executed, generates tertiary segmented imaging data through identification of the subvolumes defined in the 3D volume and identification of bones defined by the subvolumes.
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Specification