Compositions and methods for controlling Leptinotarsa

• US 9,850,496 B2
• Filed: 01/22/2015
• Issued: 12/26/2017
• Est. Priority Date: 07/19/2013
• Status: Active Grant

• Current Assignee: Monsanto Technology LLC (Bayer AG)
• Original Assignee: Monsanto Technology LLC (Bayer AG)
• Inventors: Beattie, Jodi Lynn, Crawford, Michael John, Eads, Brian Donovan, Flagel, Lex Evan, Kapoor, Mahak, Taylor, Christina Marie
• Primary Examiner(s): Ibrahim, Medina A
• Assistant Examiner(s): Zhong, Wayne
• Application Number:
  US14/603,347
• Publication Number:
  US 20150240258A1
• Time in Patent Office: 1,069 Days
• Field of Search: None
• CPC Class Codes: A01N 57/16 containing heterocyclic radicals
• CPC Class Codes: A01N 63/14 Insects
• CPC Class Codes: A01N 63/20 Bacteria; Substances produced thereby or obtained therefrom
• CPC Class Codes: A01N 63/32 Yeast
• CPC Class Codes: A01N 63/60 Isolated nucleic acids
• CPC Class Codes: C07K 14/43563 from insects
• CPC Class Codes: C12N 15/113 Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing when used in plants C12N15/8218
• CPC Class Codes: C12N 15/8218 Antisense, co-suppression, viral induced gene silencing [VIGS], post-transcriptional induced gene silencing [PTGS]
• CPC Class Codes: C12N 15/8286 for insect resistance
• CPC Class Codes: C12N 2310/14 interfering N.A.
• CPC Class Codes: Y02A 40/146 Genetically Modified [GMO] plants, e.g. transgenic plants

Abstract

Disclosed herein are methods of controlling insect pests, in particular Leptinotarsa spp. which infest crop plants, and methods of providing plants resistant to such pests. Also disclosed are polynucleotides and recombinant DNA molecules and constructs useful in such methods, insecticidal compositions such as topical sprays containing insecticidal double-stranded RNAs, and solanaceous plants with improved resistance to infestation by Leptinotarsa spp. Further disclosed are methods of selecting target genes for RNAi-mediated silencing and control of Leptinotarsa spp.

Claims

1. A method for controlling a Leptinotarsa species infestation of a plant comprising:

(a) contacting said Leptinotarsa species with a double-stranded RNA (dsRNA) comprising a strand comprising a nucleotide sequence that is complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730;

or

(b) providing in the diet of said Leptinotarsa species a dsRNA comprising a strand comprising a nucleotide sequence that is complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730;

or

(c) causing mortality or stunting in larvae of said Leptinotarsa species by providing in the diet of said larvae at least one dsRNA comprising at least one silencing element comprising a strand comprising 22 contiguous nucleotides that are complementary to a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730;

or

(d) topically applying to said plant a composition comprising at least one dsRNA comprising a strand comprising a nucleotide sequence that is complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730, wherein said at least one polynucleotide is provided in a manner that permits a Leptinotarsa species feeding on said plant to ingest said at least one polynucleotide;

or

(e) expressing in said plant at least one dsRNA comprising at least one segment that is identical or complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730, wherein said at least one polynucleotide is provided in a manner that permits a Leptinotarsa species feeding on said plant to ingest said at least one polynucleotide;

or

(f) providing to said plant at least one dsRNA comprising at least one segment that is identical or complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730;

or

(g) contacting said Leptinotarsa species with a dsRNA comprising at least one segment that is identical or complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730, wherein said dsRNA is provided in a manner that permits a Leptinotarsa species feeding on said plant to ingest said at least one polynucleotide.

2. The method of claim 1, wherein said double-stranded RNA is chemically synthesized or is produced by expression in a microorganism or by expression in a plant cell.

3. The method of claim 1, wherein said double-stranded RNA comprises a strand comprising a sequence selected from the group consisting of SEQ ID NOs:

989, 988, 1103 1105, and 1116-1119.

4. The method of claim 1, wherein said method comprises topically applying to said plant a composition comprising at least one dsRNA comprising a strand comprising a nucleotide sequence that is complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO:

730, and wherein said composition further comprises one or more components selected from the group consisting of a carrier agent, a surfactant, a cationic lipid, an organosilicone, an organosilicone surfactant, a polynucleotide herbicidal molecule, a non-polynucleotide herbicidal molecule, a non-polynucleotide pesticide, a safener, and an insect growth regulator.

5. The method of claim 1, wherein said method comprises contacting said Leptinotarsa species with an effective amount of a solution comprising a double-stranded RNA, wherein at least one strand of the double-stranded RNA is complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO:

730, wherein said Leptinotarsa species is Leptinotarsa decemlineata, and wherein RNA interference is induced and Leptinotarsa decemlineata mortality occurs.

6. The method of claim 5, wherein said solution further comprises one or more components selected from the group consisting of an organosilicone surfactant or a cationic lipid.

7. The method of claim 1, wherein said method comprises topically applying to said plant a composition comprising a double-stranded RNA comprising a strand comprising a nucleotide sequence that is complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO:

730, and wherein said Leptinotarsa species is Leptinotarsa decemlineata.

8. The method of claim 1, wherein said Leptinotarsa species is selected from the group consisting of:

Leptinotarsa behrensi, Leptinotarsa collinsi, Leptinotarsa decemlineata (Colorado potato beetle), Leptinotarsa defecta, Leptinotarsa haldemani (Haldeman'"'"'s green potato beetle), Leptinotarsa heydeni, Leptinotarsa juncta (false potato beetle), Leptinotarsa lineolata (burrobrush leaf beetle), Leptinotarsa peninsularis, Leptinotarsa rubiginosa, Leptinotarsa texana, Leptinotarsa tlascalana, Leptinotarsa tumamoca, and Leptinotarsa typographica.

9. A plant having improved resistance to a Leptinotarsa species infestation, provided by the method of claim 1, or a fruit, seed, or propagatable part of said plant.

10. The plant of claim 9, wherein said plant is selected from the group consisting of potato, tomato, and eggplant.

11. An insecticidal composition for controlling a Leptinotarsa species, comprising:

(a) at least one double-stranded RNA (dsRNA) consisting of two strands, wherein a first strand comprises at least 22 contiguous nucleotides that are complementary to a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730, wherein said at least one dsRNA causes mortality or stunting of growth in said Leptinotarsa species when ingested or contacted by said Leptinotarsa species;

or

(b) at least one dsRNA consisting of at least one silencing element that is complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730, wherein said at least one dsRNA causes mortality or stunting of growth in said Leptinotarsa species when ingested or contacted by said Leptinotarsa species;

or

(c) at least one dsRNA consisting of two strands, wherein a first strand comprises a sequence that is identical or complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730, wherein said at least one dsRNA causes mortality or stunting of growth in said Leptinotarsa species when ingested or contacted by said Leptinotarsa species;

or

(d) a dsRNA molecule that causes mortality or stunting of growth in a Leptinotarsa species when ingested or contacted by said Leptinotarsa species, wherein said dsRNA molecule consists of two strands, wherein a first strand comprises at least 22 contiguous nucleotides that are complementary to a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730;

or

(e) an insecticidal double-stranded RNA molecule that causes mortality or stunting of growth in a Leptinotarsa species when ingested or contacted by said Leptinotarsa species, wherein at least one strand of said insecticidal double-stranded RNA molecule comprises 22 contiguous nucleotides that are complementary to a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730;

or

(f) at least one double-stranded RNA consisting of two strands, wherein the sequence of a first strand is selected from the group consisting of SEQ ID NO;

989, 988, 1103 1105, and 1116-1119, wherein said at least one polynucleotide causes mortality or stunting of growth in said Leptinotarsa species when ingested or contacted by said Leptinotarsa species.

12. The insecticidal composition of claim 11, wherein said insecticidal composition is in the form of at least one selected from the group consisting of a solid, liquid, powder, suspension, emulsion, spray, encapsulation, microbeads, carrier particulates, film, matrix, seed treatment, soil drench, implantable formulation, and in-furrow formulation.

13. The insecticidal composition of claim 11, further comprising at least one component selected from the group consisting of a carrier agent, a surfactant, a cationic lipid, an organosilicone, an organosilicone surfactant, a polynucleotide herbicidal molecule, a non-polynucleotide herbicidal molecule, a non-polynucleotide pesticide, a safener, and an insect growth regulator.

14. The insecticidal composition of claim 11, wherein said insecticidal composition comprises an insecticidal double-stranded RNA molecule that causes mortality or stunting of growth in a Leptinotarsa species when ingested or contacted by said Leptinotarsa species, wherein said insecticidal double-stranded RNA molecule consists of two strands, wherein a first strand comprises a sequence that is complementary to 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO:

730, and wherein said double-stranded RNA molecule is at least 50 base-pairs in length or is between about 100 to about 500 base-pairs in length.

15. A recombinant DNA construct comprising a heterologous promoter operably linked to:

(a) DNA comprising a nucleotide sequence that is complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730;

or

(b) DNA comprising 22 or more contiguous nucleotides having 100% identity to a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730;

or

(c) DNA encoding at least one silencing element that is complementary to at least 22 contiguous nucleotides of a sequence corresponding to positions 227 to 758 of SEQ ID NO;

730;

or

(e) DNA encoding a RNA comprising at least 22 contiguous nucleotides that are complementary to a nucleotide sequence selected from the group consisting of;

SEQ ID NOs;

989, 988, 1103 1105, and 1116-1119, or the complement thereof, or an orthologous nucleotide sequence from a Leptinotarsa species or a Tribolium species, wherein the orthologous nucleotide sequence has at least 98% sequence identity with a nucleotide sequence selected from the group consisting of;

SEQ ID NOs;

989, 988, 1103 1105, and 1116-1119, wherein the percentage sequence identity is calculated over the same length;

or

(f) DNA encoding a RNA comprising at least one double-stranded RNA region, at least one strand of which comprises at least 22 contiguous nucleotides that are complementary to a nucleotide sequence selected from the group consisting of;

SEQ ID NOs;

989, 988, 1103 1105, and 1116-1119, or the complement thereof, or an orthologous nucleotide sequence from a Leptinotarsa species or a Tribolium species, wherein the orthologous nucleotide sequence has at least 98% sequence identity with a nucleotide sequence selected from the group consisting of SEQ ID NOs;

989, 988, 1103 1105, and 1116-1119, wherein the percentage sequence identity is calculated over the same length;

or

(g) DNA encoding RNA comprising a nucleotide sequence selected from the group consisting of;

SEQ ID NOs;

989, 988, 1103 1105, and 1116-1119, or the complement thereof.

16. A plant chromosome or a plastid or a recombinant plant virus vector or a recombinant baculovirus vector comprising the recombinant DNA construct of claim 15.

17. A transgenic solanaceous plant cell having in its genome the recombinant DNA construct of claim 15.

18. The transgenic solanaceous plant cell of claim 17, wherein said transgenic solanaceous plant cell further has in its genome DNA encoding at least one pesticidal agent selected from the group consisting of a patatin, a plant lectin, a phytoecdysteroid, a Bacillus thuringiensis insecticidal protein, a Xenorhabdus insecticidal protein, a Photorhabdus insecticidal protein, a Bacillus laterosporous insecticidal protein, and a Bacillus sphaericus insecticidal protein.

19. A transgenic solanaceous plant comprising the transgenic solanaceous plant cell of claim 17, or a fruit, seed, or propagatable part of said transgenic solanaceous plant.