Strategies for high throughput identification and detection of polymorphisms
First Claim
1. A method for identifying genetic variation in nucleic acid samples, comprising:
- (a) performing a reproducible complexity reduction on a plurality of nucleic acid samples, wherein the reproducible complexity reduction comprises enrichment using biotinylated capture oligonucleotide hybridization probes to capture a subset of fragments of the nucleic acid samples, and amplifying these fragments using one or more primers to obtain a pool of amplified fragments, wherein the amplified fragments are tagged with a unique identifier sequence to indicate sample origin of the amplified fragments;
(b) sequencing at least a portion of the pool of the amplified fragments to obtain sequences, wherein the sequencing step (b) is performed on a solid support;
(c) aligning the sequences obtained in step (b) to obtain an alignment; and
(d) identifying genetic variation in the plurality of nucleic acid samples using the alignment of step (c).
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Abstract
The invention relates to a method for identifying one or more polymorphisms in nucleic acid samples, comprising: (a) performing a reproducible complexity reduction on a plurality of nucleic acid samples to provide a plurality of libraries of the nucleic acid samples comprising amplified fragments, wherein the reproducible complexity reduction comprises amplifying fragments of the nucleic acid samples using one or more primers to obtain the amplified fragments, and wherein the amplified fragments in each library comprise a unique identifier sequence to indicate origin of each library obtained by the reproducible complexity reduction; (b) combining the plurality of libraries to obtain a combined library and sequencing at least a portion of the combined library to obtain sequences; (c) aligning the sequences to obtain an alignment; and (d) identifying one or more polymorphisms in the plurality of nucleic acid samples.
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Citations
12 Claims
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1. A method for identifying genetic variation in nucleic acid samples, comprising:
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(a) performing a reproducible complexity reduction on a plurality of nucleic acid samples, wherein the reproducible complexity reduction comprises enrichment using biotinylated capture oligonucleotide hybridization probes to capture a subset of fragments of the nucleic acid samples, and amplifying these fragments using one or more primers to obtain a pool of amplified fragments, wherein the amplified fragments are tagged with a unique identifier sequence to indicate sample origin of the amplified fragments; (b) sequencing at least a portion of the pool of the amplified fragments to obtain sequences, wherein the sequencing step (b) is performed on a solid support; (c) aligning the sequences obtained in step (b) to obtain an alignment; and (d) identifying genetic variation in the plurality of nucleic acid samples using the alignment of step (c). - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12)
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Specification