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Strategies for high throughput identification and detection of polymorphisms

  • US 9,898,577 B2
  • Filed: 10/10/2017
  • Issued: 02/20/2018
  • Est. Priority Date: 06/23/2005
  • Status: Active Grant
First Claim
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1. A method for identifying genetic variation in nucleic acid samples, comprising:

  • (a) performing a reproducible complexity reduction on a plurality of nucleic acid samples, wherein the reproducible complexity reduction comprises enrichment using biotinylated capture oligonucleotide hybridization probes to capture a subset of fragments of the nucleic acid samples, and amplifying these fragments using one or more primers to obtain a pool of amplified fragments, wherein the amplified fragments are tagged with a unique identifier sequence to indicate sample origin of the amplified fragments;

    (b) sequencing at least a portion of the pool of the amplified fragments to obtain sequences, wherein the sequencing step (b) is performed on a solid support;

    (c) aligning the sequences obtained in step (b) to obtain an alignment; and

    (d) identifying genetic variation in the plurality of nucleic acid samples using the alignment of step (c).

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