Leukemia methylation markers and uses thereof
First Claim
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1. A method of detecting a methylation pattern of a set of biomarkers in a subject suspected of having acute myeloid leukemia, the method comprising:
- (a) processing an extracted genomic DNA with a deaminating agent to generate a genomic DNA sample comprising deaminated nucleotides,wherein the extracted genomic DNA is obtained from a biological sample from the subject suspected of having acute myeloid leukemia; and
(b) detecting the methylation pattern of the set of biomarkers from the processed extracted genomic DNA by contacting the processed extracted genomic DNA with a set of probes and performing a DNA sequencing analysis to detect the methylation pattern of the set of biomarkers,wherein the set of biomarkers comprises one or more biomarkers selected from;
cg01336231, cg01413582, cg01509330, cg02264990, cg02329430, cg02858512, cg03297901, cg03556653, cg04596071, cg05038216, cg06034933, cg08098128, cg13066703, cg17757602, cg18869709, cg19966212, cg20300129, cg23193870, cg23680451, and cg25145765, andwherein the set of probes hybridizes to the one or more biomarkers.
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Abstract
Disclosed herein are methods and kits for identifying a subject as having leukemia. Also provided herein are methods and kits for determining a leukemia subtype in subject. Further provided herein are methods and kits for determining the prognosis of a subject having leukemia and for determining the progression of leukemia in a subject.
55 Citations
22 Claims
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1. A method of detecting a methylation pattern of a set of biomarkers in a subject suspected of having acute myeloid leukemia, the method comprising:
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(a) processing an extracted genomic DNA with a deaminating agent to generate a genomic DNA sample comprising deaminated nucleotides, wherein the extracted genomic DNA is obtained from a biological sample from the subject suspected of having acute myeloid leukemia; and (b) detecting the methylation pattern of the set of biomarkers from the processed extracted genomic DNA by contacting the processed extracted genomic DNA with a set of probes and performing a DNA sequencing analysis to detect the methylation pattern of the set of biomarkers, wherein the set of biomarkers comprises one or more biomarkers selected from; cg01336231, cg01413582, cg01509330, cg02264990, cg02329430, cg02858512, cg03297901, cg03556653, cg04596071, cg05038216, cg06034933, cg08098128, cg13066703, cg17757602, cg18869709, cg19966212, cg20300129, cg23193870, cg23680451, and cg25145765, and wherein the set of probes hybridizes to the one or more biomarkers. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14)
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15. A method of detecting a methylation pattern of a set of biomarkers in a subject suspected having acute lymphoblastic leukemia, the method comprising:
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(a) processing an extracted genomic DNA with a deaminating agent to generate a genomic DNA sample comprising deaminated nucleotides, wherein the extracted genomic DNA is obtained from a biological sample from the subject suspected of having acute lymphoblastic leukemia; and (b) detecting the methylation pattern of the set of biomarkers from the processed extracted genomic DNA by contacting the processed extracted genomic DNA with a set of probes and performing a DNA sequencing analysis to detect the methylation pattern of the set of biomarkers, wherein the set of biomarkers comprises one or more biomarkers selected from; cg01628067, cg03001333, cg04984818, cg05145233, cg05304729, cg05956452, cg06261066, cg09157302, cg14608384, cg15289427, cg15608301, cg15707093, cg16266227, cg18869709, cg19470372, cg20686234, cg21913319, cg24720672, cg24747122, cg24983367, cg26584619 and cg27178401, and wherein the set of probes hybridizes to the one or more biomarkers. - View Dependent Claims (16, 17, 18, 19, 20, 21, 22)
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Specification