Humanized antibodies that recognize beta amyloid peptide
First Claim
Patent Images
1. A humanized immunoglobulin light chain comprising (i) variable region complementarity determining regions (CDRs) from the 3D6 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 3D6 light chain variable region sequence, wherein the framework residue is selected from the group consisting of;
(a) a residue that non-covalently binds antigen directly;
(b) a residue adjacent to a CDR;
(c) a CDR-interacting residue; and
(d) a residue participating in the VL-VH interface.
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Abstract
The invention provides improved agents and methods for treatment of diseases associated with amyloid deposits of Aβ in the brain of a patient. Preferred agents include humanized antibodies.
165 Citations
158 Claims
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1. A humanized immunoglobulin light chain comprising (i) variable region complementarity determining regions (CDRs) from the 3D6 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 3D6 light chain variable region sequence, wherein the framework residue is selected from the group consisting of;
(a) a residue that non-covalently binds antigen directly;
(b) a residue adjacent to a CDR;
(c) a CDR-interacting residue; and
(d) a residue participating in the VL-VH interface. - View Dependent Claims (3, 4, 15, 17, 18, 21, 22, 23, 28, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 58, 59, 60, 61, 62, 72, 75, 77, 78)
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 3D6 light chain variable region sequence, wherein the framework residue is selected from the group consisting of;
-
2. A humanized immunoglobulin heavy chain comprising (i) variable region complementarity determining regions (CDRs) from the 3D6 immunoglobulin heavy chain variable region sequence set forth as SEQ ID NO:
- 4, and (ii) a variable framework region from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 3D6 heavy chain variable region sequence, wherein the framework residue is selected from the group consisting of;
(a) a residue that non-covalently binds antigen directly;
(b) a residue adjacent to a CDR;
(c) a CDR-interacting residue; and
(d) a residue participating in the VL-VH interface. - View Dependent Claims (5)
- 4, and (ii) a variable framework region from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 3D6 heavy chain variable region sequence, wherein the framework residue is selected from the group consisting of;
-
6. A humanized immunoglobulin light chain comprising (i) variable region complementarity determining regions (CDRs) from the 3D6 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 3D6 light chain variable region sequence, wherein the framework residue is a residue capable of affecting light chain variable region conformation or function as identified by analysis of a three-dimensional model of the 3D6 immunoglobulin light chain variable region.
- View Dependent Claims (8, 10, 11)
-
7. A humanized immunoglobulin heavy chain comprising (i) variable region complementarity determining regions (CDRs) from the 3D6 immunoglobulin heavy chain variable region sequence set forth as SEQ ID NO:
- 4, and (ii) variable framework region from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 3D6 heavy chain variable region sequence, wherein the framework residue is a residue capable of affecting heavy chain variable region conformation or function as identified by analysis of a three-dimensional model of the 3D6 immunoglobulin heavy chain variable region.
- View Dependent Claims (9, 12, 16, 19, 20, 24, 25, 26, 27, 29, 73)
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13. A humanized immunoglobulin light chain comprising (i) variable region complementarity determining regions (CDRs) from the 3D6 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 2, and (ii) a variable framework region from a human acceptor immunoglobulin light chain, provided that at least one framework residue selected from the group consisting of L1, L2, L36 and L46 (Kabat numbering convention) is substituted with the corresponding amino acid residue from the mouse 3D6 light chain variable region sequence.
-
14. A humanized immunoglobulin heavy chain comprising (i) variable region complementarity determining regions from the 3D6 heavy chain variable region sequence set forth as SEQ ID NO:
- 4, and (ii) a variable framework regions from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue selected from the group consisting of H49, H93 and H94 (Kabat numbering convention) is substituted with the corresponding amino acid residue from the mouse 3D6 heavy chain variable region sequence.
-
30. A light chain comprising the complementarity determining regions (CDRs) and variable region framework residues L1, L2, L36 and L46 (Kabat numbering convention) from the monoclonal antibody 3D6 light chain, wherein the remainder of the light chain is from a human immunoglobulin.
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31. A heavy chain comprising the complementarity determining regions (CDRs) and variable framework residues H49, H93 and H94 (Kabat numbering convention) from the monoclonal antibody 3D6 heavy chain, wherein the remainder of the heavy chain is from a human immunoglobulin.
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42. A humanized immunoglobulin comprising a humanized heavy chain and a humanized light chain, wherein
(a) the humanized light chain comprises three complementarity determining regions (CDR1, CDR2 and CDR3) having amino acid sequences from the corresponding complementarity determining regions of the mouse 3D6 immunoglobulin light chain variable domain designated SEQ ID NO: - 2, and a variable region framework from a human light chain variable region framework sequence provided that at least one position selected from a first group consisting of L1, L2, L36 and L46 (Kabat numbering convention) is occupied by the same amino acid residue present in the equivalent position of the mouse 3D6 immunoglobulin light chain variable region framework; and
(b) the humanized heavy chain comprises three complementarity determining regions (CDR1, CDR2 and CDR3) having amino acid sequences from the corresponding complementarity determining regions of the mouse 3D6 immunoglobulin heavy chain variable domain designated SEQ ID NO;
4, and a variable region framework from a human heavy chain variable region framework sequence provided that at least one position selected from a second group consisting of H49, H93 and H94 (Kabat numbering convention) is occupied by the same amino acid residue present in the equivalent position of the mouse 3D6 immunoglobulin heavy chain variable region framework;
wherein the humanized immunoglobulin specifically binds to beta amyloid peptide (AP) with a binding affinity of at least 107 M−
1, wherein the 3D6 immunoglobulin has the light chain with a variable domain designated SEQ ID NO;
2 and the heavy chain with a variable domain designated SEQ ID NO;
4. - View Dependent Claims (43, 44, 45, 46, 47, 48, 79)
- 2, and a variable region framework from a human light chain variable region framework sequence provided that at least one position selected from a first group consisting of L1, L2, L36 and L46 (Kabat numbering convention) is occupied by the same amino acid residue present in the equivalent position of the mouse 3D6 immunoglobulin light chain variable region framework; and
-
49. A humanized antibody comprising the complementarity determining regions (CDR1, CDR2 and CDR3) of the 3D6 variable light chain sequence set forth as SEQ ID NO:
- 2.
-
50. A humanized antibody comprising the complementarity determining regions (CDR1, CDR2 and CDR3) of the 3D6 variable heavy chain sequence set forth as SEQ ID NO:
- 4.
-
51. A humanized antibody, or antigen-binding fragment thereof, which specifically binds to beta amyloid peptide (Aβ
- ), comprising a variable region comprising complementarity determining regions (CDRs) corresponding to CDRs from the mouse 3D6 antibody.
-
52. A humanized antibody which binds beta amyloid peptide (Aβ
- ) with an affinity of at least 107 M−
1 comprising;
(a) a light chain variable domain comprising murine 3D6 complementarity determining region (CDR)amino acid residues and human VL subgroup II variable domain framework region (FR)amino acid residues; and
(b) a heavy chain variable domain comprising murine 3D6 complementarity determining region (CDR)amino acid residues and human VH subgroup III variable domain framework region (FR)amino acid residues.
- ) with an affinity of at least 107 M−
-
53. A chimeric immunoglobulin comprising variable region complementarity determining regions (CDRs) from the 3D6 immunoglobulin variable region sequences set forth as SEQ ID NO:
- 2 or SEQ ID NO;
4, and variable framework regions from a human acceptor immunoglobulin.
- 2 or SEQ ID NO;
-
54. An immunoglobulin, or antigen-binding fragment thereof, comprising a variable heavy chain region as set forth in SEQ ID NO:
- 8 and a variable light chain region as set forth in SEQ ID NO;
5.
- 8 and a variable light chain region as set forth in SEQ ID NO;
-
55. An immunoglobulin, or antigen-binding fragment thereof, comprising a variable heavy chain region as set forth in SEQ ID NO:
- 12 and a light chain region as set forth in SEQ ID NO;
11.
- 12 and a light chain region as set forth in SEQ ID NO;
-
56. An immunoglobulin comprising a variable heavy chain region as set forth in SEQ ID NO:
- 8, a variable light chain region as set forth in SEQ ID NO;
5, and constant regions from IgG1.
- 8, a variable light chain region as set forth in SEQ ID NO;
-
57. An immunoglobulin comprising a variable heavy chain region as set forth in SEQ ID NO:
- 12, a light chain region as set forth in SEQ ID NO;
11, and constant regions from IgG1.
- 12, a light chain region as set forth in SEQ ID NO;
-
63. An isolated polypeptide comprising a fragment of SEQ ID NO:
- 2 selected from the group consisting of amino acids 24-39 of SEQ ID NO;
2, amino acids 55-61 of SEQ ID NO;
2 and amino acids 94-102 of SEQ ID NO;
2.
- 2 selected from the group consisting of amino acids 24-39 of SEQ ID NO;
-
64. An isolated polypeptide comprising amino acids 24-39 of SEQ ID NO:
- 2, amino acids 55-61 of SEQ ID NO;
2 and amino acids 94-102 of SEQ ID NO;
2. - View Dependent Claims (74)
- 2, amino acids 55-61 of SEQ ID NO;
-
65. An isolated polypeptide comprising a fragment of SEQ ID NO:
- 4 selected from the group consisting of amino acids 31-35 of SEQ ID NO;
4, amino acids 50-66 of SEQ ID NO;
4 and amino acids 99-107 of SEQ ID NO;
4.
- 4 selected from the group consisting of amino acids 31-35 of SEQ ID NO;
-
66. An isolated polypeptide comprising amino acids 31-35 of SEQ ID NO:
- 4, amino acids 50-66 of SEQ ID NO;
4 and amino acids 99-107 of SEQ ID NO;
4.
- 4, amino acids 50-66 of SEQ ID NO;
-
67. An isolated polypeptide comprising the amino acid sequence of SEQ ID NO:
- 2.
-
68. An isolated polypeptide comprising the amino acid sequence of SEQ ID NO:
- 4.
-
69. A variant of a polypeptide comprising the amino acid sequence of SEQ ID NO:
- 2, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to direct specific binding to beta amyloid peptide (Aβ
) with a binding affinity of at least 107 M−
1.
- 2, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to direct specific binding to beta amyloid peptide (Aβ
-
70. A variant of a polypeptide comprising the amino acid sequence of SEQ ID NO:
- 4, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to specifically bind beta amyloid peptide (Aβ
) with a binding affinity of at least 107 M−
1.
- 4, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to specifically bind beta amyloid peptide (Aβ
-
71. An isolated polypeptide comprising residues 1-112 of the amino acid sequence of SEQ ID NO:
- 2 or comprising residues 1-119 of the amino acid sequence of SEQ ID NO;
4.
- 2 or comprising residues 1-119 of the amino acid sequence of SEQ ID NO;
-
76. An isolated nucleic acid molecule comprising the nucleotide sequence of SEQ ID NO:
- 1 or 3.
-
80. A method of producing an antibody or fragment thereof, said method comprising culturing a host cell that expresses a nucleic acid molecule encoding said antibody or fragment under conditions such that the antibody or fragment is produced, and isolating said antibody or fragment from the host cell or culture, wherein said antibody or fragment comprises amino acids 24-39 of SEQ ID NO:
- 2, amino acids 55-61 of SEQ ID NO;
2 and amino acids 94-102 of SEQ ID NO;
2.
- 2, amino acids 55-61 of SEQ ID NO;
-
81. A method of producing an antibody or fragment thereof, said method comprising culturing a host cell that expresses a nucleic acid molecule encoding said antibody or fragment, under conditions such that the antibody or fragment is produced, and isolating said antibody from the host cell or culture, wherein said antibody or fragment comprises amino acids 31-35 of SEQ ID NO:
- 4, amino acids 50-66 of SEQ ID NO;
4 and amino acids 99-112 of SEQ ID NO;
4.
- 4, amino acids 50-66 of SEQ ID NO;
-
82. A method for identifying residues amenable to substitution in a humanized 3D6 immunoglobulin variable framework region, comprising modeling the three-dimensional structure of the 3D6 variable region based on a solved immunoglobulin structure and analyzing said model for residues capable of affecting 3D6 immunoglobulin variable region conformation or function, such that residues amenable to substitution are identified.
-
83. Use of the variable region sequence set forth as SEQ ID NO:
- 2 or SEQ ID NO;
4, or any portion thereof, in producing a three-dimensional image of a 3D6 immunoglobulin, 3D6 immunoglobulin chain, or domain thereof.
- 2 or SEQ ID NO;
-
84. A humanized immunoglobulin light chain comprising (i) variable region complementary determining regions (CDRs) from the 10D5 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 14, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 10D5 light chain variable region sequence, wherein the framework residue is selected from the group consisting of;
(a) a residue that non-covalently binds antigen directly;
(b) a residue adjacent to a CDR;
(c) a CDR-interacting residue; and
(d) a residue participating in the VL-VH interface. - View Dependent Claims (86, 87, 88, 102, 103, 104, 105, 106, 112, 147, 152, 153, 154)
- 14, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 10D5 light chain variable region sequence, wherein the framework residue is selected from the group consisting of;
-
85. A humanized immunoglobulin heavy chain comprising (i) variable region complementary determining regions (CDRs) from the 10D5 immunoglobulin heavy chain variable region sequence set forth as SEQ ID NO:
- 16, and (ii) a variable framework region from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 10D5 heavy chain variable region sequence, wherein the framework residue is selected from the group consisting of;
(a) a residue that non-covalently binds antigen directly;
(b) a residue adjacent to a CDR;
(c) a CDR-interacting residue; and
(d) a residue participating in the VL-VH interface. - View Dependent Claims (89, 90, 91)
- 16, and (ii) a variable framework region from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 10D5 heavy chain variable region sequence, wherein the framework residue is selected from the group consisting of;
-
92. A humanized immunoglobulin light chain comprising (i) variable region complementary determining regions (CDRs) from the 10D5 immunoglobulin light chain variable region sequence set forth as SEQ ID NO:
- 14, and (ii) a variable framework region from a human acceptor immunoglobulin light chain sequence, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 10D5 light chain variable region sequence, wherein the framework residue is a residue capable of affecting light chain variable region conformation or function as identified by analysis of a three-dimensional model of the 10D5 immunoglobulin light chain variable region.
- View Dependent Claims (94, 96, 97, 98)
-
93. A humanized immunoglobulin heavy chain comprising (i) variable region complementary determining regions (CDRs) from the 10D5 immunoglobulin heavy chain variable region sequence set forth as SEQ ID NO:
- 16, and (ii) a variable framework region from a human acceptor immunoglobulin heavy chain, provided that at least one framework residue is substituted with the corresponding amino acid residue from the mouse 10D5 heavy chain variable region sequence, wherein the framework residue is a residue capable of affecting heavy chain variable region conformation or function as identified by analysis of a three-dimensional model of the 10D5 immunoglobulin heavy chain variable region.
- View Dependent Claims (95, 99, 100, 101, 107, 108, 109, 110, 111, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 133, 134, 135, 136, 137, 148, 150)
-
123. A humanized immunoglobulin comprising a humanized heavy chain and a humanized light chain, wherein
(a) the humanized light chain comprises three complementary determining regions (CDR1, CDR2 and CDR3) having amino acid sequences from the corresponding complementarily determining regions of the mouse 10D5 immunoglobulin light chain variable domain designated SEQ ID NO: - 14, and a variable region framework from a human light chain variable region framework sequence provided that at least one framework residue selected from the group consisting of a canonical residue, a vernier residue, a packing residue and a rare residue, is occupied by the same amino acid residue present in the equivalent position of the mouse 10D5 immunoglobulin light chain variable region framework; and
(b) the humanized heavy chain comprises three complementary determining regions (CDR1, CDR2 and CDR3) having amino acid sequences from the corresponding complementary determining regions of the mouse 10D5 immunoglobulin heavy chain variable domain designated SEQ ID NO;
16, and a variable region framework from a human heavy chain variable region framework sequence provided that at least one framework residue selected from a second group consisting of a canonical residue, a vernier residue, a packing residue and a rare residue, is occupied by the same amino acid residue present in the equivalent position of the mouse 10D5 immunoglobulin heavy chain variable region framework;
wherein the humanized immunoglobulin specifically binds to beta amyloid peptide (“
Aβ
”
) with a binding affinity of at least 10−
7 M, wherein the 10D5 immunoglobulin has the light chain with a variable domain designated SEQ ID NO;
14 and the heavy chain with a variable domain designated SEQ ID NO;
16. - View Dependent Claims (124, 125, 126, 127, 128)
- 14, and a variable region framework from a human light chain variable region framework sequence provided that at least one framework residue selected from the group consisting of a canonical residue, a vernier residue, a packing residue and a rare residue, is occupied by the same amino acid residue present in the equivalent position of the mouse 10D5 immunoglobulin light chain variable region framework; and
-
129. A humanized antibody comprising the complementary determining regions (CDR1, CDR2 and CDR3) of the 10D5 variable light chain sequence set forth as SEQ ID NO:
- 14.
-
130. A humanized antibody comprising the complementary determining regions (CDR1, CDR2 and CDR3) of the 10D5 variable heavy chain sequence set forth as SEQ ID NO:
- 16.
-
131. A humanized antibody, or antigen-binding fragment thereof, which specifically binds to beta amyloid peptide (Aβ
- ), comprising a variable region comprising complementary determining regions (CDRs) corresponding to CDRs from the mouse 10D5 antibody.
-
132. A chimeric immunoglobulin comprising variable region sequence substantially as set forth in SEQ ID NO:
- 14 or SEQ ID NO;
16, and constant region sequences from a human immunoglobulin.
- 14 or SEQ ID NO;
-
138. An isolated polypeptide comprising a fragment of SEQ ID NO:
- 2 selected from the group consisting of amino acids 24-39 of SEQ ID NO;
2, amino acids 55-61 of SEQ ID NO;
2 and amino acids 94-102 of SEQ ID NO;
2.
- 2 selected from the group consisting of amino acids 24-39 of SEQ ID NO;
-
139. An isolated polypeptide comprising amino acids 24-39 of SEQ ID NO:
- 2, amino acids 55-61 of SEQ ID NO;
2 and amino acids 94-102 of SEQ ID NO;
2. - View Dependent Claims (149)
- 2, amino acids 55-61 of SEQ ID NO;
-
140. An isolated polypeptide comprising a fragment of SEQ ID NO:
- 4 selected from the group consisting of amino acids 31-37 of SEQ ID NO;
4, amino acids 52-67 of SEQ ID NO;
4 and amino acids 100-112 of SEQ ID NO;
4.
- 4 selected from the group consisting of amino acids 31-37 of SEQ ID NO;
-
141. An isolated polypeptide comprising amino acids 31-37 of SEQ ID NO:
- 4, amino acids 52-67 of SEQ ID NO;
4 and amino acids 100-112 of SEQ ID NO;
4.
- 4, amino acids 52-67 of SEQ ID NO;
-
142. An isolated polypeptide comprising the amino acid sequence of SEQ ID NO:
- 14.
-
143. An isolated polypeptide comprising the amino acid sequence of SEQ ID NO:
- 16.
-
144. A variant of a polypeptide comprising the amino acid sequence of SEQ ID NO:
- 14, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to specifically bind beta amyloid peptide (Aβ
) with a binding affinity of at least 10−
7 M.
- 14, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to specifically bind beta amyloid peptide (Aβ
-
145. A variant of a polypeptide comprising the amino acid sequence of SEQ ID NO:
- 16, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to direct specific binding to beta amyloid peptide (Aβ
) with a binding affinity of at least 10−
7 M.
- 16, said variant comprising at least one conservative amino acid substitution, wherein the variant retains the ability to direct specific binding to beta amyloid peptide (Aβ
-
146. An isolated polypeptide comprising residues 1-112 of the amino acid sequence of SEQ ID NO:
- 14 or comprising residues 1-123 of the amino acid sequence of SEQ ID NO;
16.
- 14 or comprising residues 1-123 of the amino acid sequence of SEQ ID NO;
-
151. An isolated nucleic acid molecule comprising the nucleotide sequence of SEQ ID NO:
- 13 or 15.
-
155. A method of producing an antibody, or fragment thereof, said method comprising culturing a host cell that expresses a nucleic acid molecule encoding said antibody or fragment under conditions such that the antibody or fragment is produced, and isolating said antibody from the host cell or culture, wherein said antibody or fragment comprises amino acids 24-39 of SEQ ID NO:
- 2, amino acids 55-61 of SEQ ID NO;
2 and amino acids 94-102 of SEQ ID NO;
2.
- 2, amino acids 55-61 of SEQ ID NO;
-
156. A method of producing an antibody, or fragment thereof, said method comprising culturing a host cell that expresses a nucleic acid molecule encoding said antibody or fragment under conditions such that the antibody or fragment is produced, and isolating said antibody from the host cell or culture, wherein said antibody or fragment comprises amino acids 31-37 of SEQ ID NO:
- 4, amino acids 52-67 of SEQ ID NO;
4 and amino acids 100-112 of SEQ ID NO;
4.
- 4, amino acids 52-67 of SEQ ID NO;
-
157. A method for identifying residues amenable to substitution in a humanized 10D5 immunoglobulin variable framework region, comprising modeling the three-dimensional structure of the 10D5 variable region based on a solved immunoglobulin structure and analyzing said model for residues capable of affecting 10D5 immunoglobulin variable region conformation or function, such that residues amenable to substitution are identified.
-
158. Use of the variable region sequence set forth as SEQ ID NO:
- 14 or SEQ ID NO;
16, or any portion thereof, in producing a three-dimensional image of a 10D5 immunoglobulin, 10D5 immunoglobulin chain, or domain thereof.
- 14 or SEQ ID NO;
Specification