Animal cell confluence detection method and apparatus

• US 20060166305A1
• Filed: 01/27/2005
• Published: 07/27/2006
• Est. Priority Date: 01/27/2005
• Status: Abandoned Application

• Current Assignee: Genetix Ltd.
• Original Assignee: Genetix Ltd.
• Inventors: Jiang, Yonggang, Board, Andrew
• Application Number:
  US11/050,826
• Publication Number:
  US 20060166305A1
• Time in Patent Office: Days
• US Class Current: 435/29
• CPC Class Codes: C12M 41/36 of biomass, e.g. colony counters or by turbidity measurements electrooptical investigation of individual particles G01N15/14, flow cytometers G01N15/1404
• CPC Class Codes: G01N 1/2813 Producing thin layers of samples on a substrate, e.g. smearing, spinning-on G01N1/30 takes precedence
• CPC Class Codes: G01N 2001/368 Mounting multiple samples in one block, e.g. TMA [Tissue Microarrays]
• CPC Class Codes: G01N 21/253 for batch operation, i.e. multisample apparatus analytical automats G01N35/00
• CPC Class Codes: G01N 21/6428 Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" in vivo A61B5/00; immunoassay G01N33/53
• CPC Class Codes: G01N 21/6452 Individual samples arranged in a regular 2D-array, e.g. multiwell plates
• CPC Class Codes: G01N 21/6456 Spatial resolved fluorescence measurements; Imaging
• CPC Class Codes: G01N 2201/062 LED's

Abstract

The invention provides an apparatus and process for detecting the degree of confluence of animal cells being cultured in a well plate. A well plate is arranged in an imaging station and illuminated with a ring of LEDs, or other optical source, from below at an oblique angle. An image of the well is captured with a CCD camera or other detector from above or below, such that the well image is taken in a dark field configuration where light from the optical source, if not scattered, does not contribute to the well image. By the simple solution of illuminating wells of a well plate from below at an oblique angle, it has been found that many animal cell types can be imaged with sufficient contrast to allow cell identification and consequent cell area computation using image processing techniques, thereby allowing confluence to be determined of animal cells being cultured in well plates. This avoids the need for more complex optical imaging techniques, such as phase contrast microscopy.

Claims

1. A process for detecting the degree of confluence of animal cells being cultured in a biological sample container, comprising:

arranging a biological sample container in an object position of an imaging station;

illuminating the object position with an optical source from below at an oblique angle;

collecting an image of the biological sample container arranged in the object position such that the image is taken in a dark field configuration where light from the optical source, if not scattered, does not contribute to the image; and

processing the image to determine the degree of confluence of the animal cells in the biological sample container.

2. The process of claim 1, wherein the biological sample container is a well plate comprising a plurality of wells, and wherein the optical source and the detector are iteratively realigned relative to the well plate so that images of a sequence of wells in the well plate are collected and processed, whereby the degree of confluence of the animal cells is determined in a plurality of wells across the well plate.

3. The process of claim 1, wherein the optical source comprises a plurality of directional light emitting units arranged to emit beams having optical axes lying on the surface of a common cone, the point of which is coincident with the object position.

4. The process of claim 1, wherein the optical source comprises a plurality of directional light emitting units arranged to emit beams having optical axes lying on the surface of at least two cones whose points are coincident with each other and the object position.

5. The process of claim 3, wherein the light emitting units are LEDs.

6. The process of claim 5, wherein the LEDs are white LEDs.

7. The process of claim 1, wherein the image is collected from below the object position.

8. The process of claim 1, wherein the optical source is formed such that an open light path exists downwardly from the object position, and the light is collected via this open light path.

9. The process of claim 1, wherein the degree of confluence is determined by an automated cell count which is translated into an area by multiplication of the cell count by an area representing an average area for the cell type being cultured.

10. The process of claim 1, wherein the degree of confluence is determined by processing the image to:

establish cell boundaries, compute the area of each cell from the cell boundary, and sum the cell areas.

11. An apparatus for detecting the degree of confluence of animal cells being cultured in a biological sample container, comprising:

an imaging station where a biological sample container can be arranged in an object position;

an optical source arranged to illuminate the object position from below at an oblique angle;

a detector arranged to collect an image of the biological sample container arranged in the object position such that the image is taken in a dark field configuration where light from the optical source, if not scattered, does not contribute to the image; and

an image processing unit for processing images to determine the degree of confluence of animal cells culturing in the biological sample container.

12. The apparatus of claim 11, further comprising:

an optics positioning system for aligning the optical source and the detector relative to the object position so that different parts of a biological sample container arranged in the imaging station can be moved into the object position.

13. The apparatus of claim 11, further comprising:

a container positioning system for aligning a biological sample container arranged in the imaging station relative to the object position so that different parts of a biological sample container arranged in the imaging station can be moved into the object position.

14. The apparatus of claim 11, wherein the optical source comprises a plurality of directional light emitting units arranged to emit beams having optical axes lying on the surface of a common cone, the point of which is coincident with the object position.

15. The apparatus of claim 11, wherein the optical source comprises a plurality of directional light emitting units arranged to emit beams having optical axes lying on the surface of at least two cones whose points are coincident with each other and the object position.

16. The apparatus of claim 14, wherein the light emitting units are LEDs.

17. The apparatus of claim 16, wherein the LEDs are white LEDs.

18. The apparatus of claim 11, wherein the detector is positioned to collect light scattered downwardly from the object position.

19. The apparatus of claim 18, wherein the optical source is formed such that an open light path exists downwardly from the object position, and the light is collected by the detector via this open light path.

20. The apparatus of claim 11, wherein the image processing unit is operable to determine the degree of confluence by an automated cell count which is translated into an area by multiplication of the cell count by an area representing an average area for the cell type being cultured.

21. The apparatus of claim 11, wherein the image processing unit is operable to determine the degree of confluence by processing the image to:

establish cell boundaries, compute the area of each cell from the cell boundary, and sum the cell areas.

22. The apparatus of claim 11, comprising a biological sample container feeder/stacker operable to supply each of a plurality of biological sample containers from a feed to the imaging station and return them to a stack.

23. The apparatus of claim 22, comprising a further biological sample container feeder/stacker operable to supply each of a plurality of further biological sample containers from a further feed to a replating station and return them to a further stack.

24. The apparatus of claim 11, comprising a cell picking head having at least one hollow pin for aspirating animal cells, and a head position system operable to move the cell picking head to allow replating of animal cells from a target biological sample container to a destination biological sample container.

35. The apparatus of claim 11, wherein the optical source comprises a lamp source.

36. The apparatus of claim 11, wherein the optical source comprises a xenon lamp.

25. Use of a robot equipped with an animal cell picking head comprising at least one hollow pin for aspirating animal cells and replating them by moving them from a target well plate to a destination biological sample container under the control of a head positioning system, the use comprising:

providing a well plate in which animal cells are being cultured;

arranging the well plate at an imaging station and detecting the degree of confluence in each well by repeatedly;

(i) illuminating a selected well from below at an oblique angle;

(ii) acquiring an image of the illuminated well; and

(iii) processing the image of the well to determine the degree of confluence; and

dependent on the degree of confluence, either replating the animal cells out of the well plate, or leaving them to continue to culture.

26. The use of claim 25, wherein the replating is decided upon on individually for each well based on the degree of confluence of the well exceeding a confluence threshold.

27. The use of claim 25, wherein the replating is decided upon on a well plate specific basis, in which replating is performed if a threshold number of wells exceed a confluence threshold.

28. The use of claim 27, wherein the threshold number is 1.

29. The use of claim 25, wherein the robot is further equipped with at least one automated well plate supply mechanism, which is used to supply each of a plurality of well plates in turn to the imaging station for confluence determination.

30. The use of claim 25, wherein the animal cells are replated out of the well plate using a medium to assist dislodging the animal cells.

31. The use of claim 30, wherein the medium is a buffer containing divalent ions.

32. The use of claim 30, wherein the medium is a buffer containing enzymes.

33. The use of claim 32, wherein the medium is maintained at an elevated temperature to promote its activity in dislodging the animal cells.

34. The use of claim 25, further comprising applying a mechanical shock to the well plate to assist dislodging of the animal cells.