Method of using G-matrix Fourier transformation nuclear magnetic resonance (GFT NMR) spectroscopy for rapid chemical shift assignment and secondary structure determination of proteins

• US 6,831,459 B2
• Filed: 07/11/2003
• Issued: 12/14/2004
• Est. Priority Date: 07/11/2002
• Status: Expired due to Term

• Current Assignee: The Research Foundation for The State University of New York (State University of New York)
• Original Assignee: The Research Foundation for The State University of New York (State University of New York)
• Inventors: Atreya, Hanudatta S., Kim, Seho, Szyperski, Thomas A.
• Primary Examiner(s): Gutierrez, Diego
• Assistant Examiner(s): Vargas, Dixomara
• Application Number:
  US10/617,482
• Publication Number:
  US 20040061497A1
• Time in Patent Office: 522 Days
• Field of Search: 324/300, 324/307, 324/309, 324/310, 600/410
• US Class Current: 324/309
• CPC Class Codes: G01R 33/4633 Sequences for multi-dimensional NMR
• CPC Class Codes: G01R 33/465 applied to biological material, e.g. in vitro testing
• CPC Class Codes: Y10T 436/24 Nuclear magnetic resonance, electron spin resonance or other spin effects or mass spectrometry

Abstract

The present invention presents a new approach to rapidly obtaining precise high-dimensional NMR spectral information, named “GFT NMR spectroscopy”, which is based on the phase sensitive joint sampling of the indirect dimensions spanning a subspace of a conventional NMR experiment. The phase-sensitive joint sampling of several indirect dimensions of a high-dimensional NMR experiment leads to largely reduced minimum measurement times when compared to FT NMR. This allows one to avoid the “sampling limited” data collection regime. Concomitantly, the analysis of the resulting chemical shift multiplets, which are edited by the G-matrix transformation, yields increased precision for the measurement of the chemical shifts. Additionally, methods of conducting specific GFT NMR experiments as well as methods of conducting a combination of GFT NMR experiments for rapidly obtaining precise chemical shift assignment and determining the structure of proteins or other molecules are disclosed.

Claims

1. A method of conducting a (N,N−

K) dimensional (D) G-matrix Fourier transformation (GFT) nuclear magnetic resonance (NMR) experiment, wherein N is the dimensionality of an N-dimensional (ND) Fourier transformation (FT) NMR experiment and K is the desired reduction in dimensionality relative to N, said method comprising;

providing a sample;

applying radiofrequency pulses for the ND FT NMR experiment to the sample;

selecting m indirect chemical shift evolution periods of the ND FT NMR experiment, wherein m equals K+1;

jointly sampling the m indirect chemical shift evolution periods;

independently cosine and sine modulating NMR signals detected in a direct dimension to generate (N−

K)D basic NMR spectra comprising frequency domain signals with 2^K chemical shift multiplet components, thereby enabling phase-sensitive sampling of all jointly sampled m indirect chemical shift evolution periods; and

transforming the (N−

K) D basic NMR spectra into (N−

K) D phase-sensitively edited basic NMR spectra, wherein the 2^K chemical shift multiplet components of the (N−

K) D basic NMR spectra are edited to yield (N−

K) D phase-sensitively edited basic NMR spectra having individual chemical shift multiplet components.

2. The method according to claim 1, wherein said transforming is carried out by applying a G-matrix defined as $\hat{G}$

(K)=[[1i1-i]⊗

…

⊗

[1i1-i]⊗

[1i]],

wherein i=√

{square root over (−

1)}, under conditions effective to edit the chemical shift multiplet components in a time domain.

3. The method according to claim 1, wherein said transforming is carried out by applying a F-matrix defined as {circumflex over (F)}(K)={circumflex over (F)}(K−

1){circle around (x)}{circumflex over (F)}(1), wherein $\hat{F}<br><br>\left(1\right)=\left[\begin{array}{cc}1& 1\\ 1& -1\end{array}\right],$

under conditions effective to edit the chemical shift multiplet components in a frequency domain.

4. The method according to claim 1 further comprising:

selecting m′

indirect chemical shift evolution periods of the (N−

K)D FT NMR experiment, wherein m′

equals K′

+1;

jointly sampling the m′

indirect chemical shift evolution periods;

independently cosine and sine modulating NMR signals detected in a direct dimension to generate (N−

K−

K′

)D basic NMR spectra comprising frequency domain signals with 2^K′

chemical shift multiplet components, thereby enabling phase-sensitive sampling of all jointly sampled m′

indirect chemical shift evolution periods; and

transforming the (N−

K−

K′

) D basic NMR spectra into (N−

K−

K′

) D phase-sensitively edited basic NMR spectra, wherein the 2^K′

chemical shift multiplet components of the (N−

K−

K′

) D basic NMR spectra are edited to yield (N−

K−

K′

) D phase-sensitively edited basic NMR spectra having individual chemical shift multiplet components.

5. The method according to claim 4 further comprising:

repeating one or more times said selecting, said jointly sampling, said independently cosine and sine modulating, and said transforming, wherein m′

is modified for each repetition.

6. The method according to claim 1 further comprising:

repeating one or more times said selecting, said jointly sampling, said independently cosine and sine modulating, and said transforming, wherein, for each repetition, said selecting comprises selecting m-j indirect chemical shift evolution periods out of the m indirect chemical shift evolution periods, wherein j ranges from 1 to K, under conditions effective to generate 2^K-j jth order central peak NMR spectra.

7. The method according to claim 1, wherein said applying radiofrequency pulses is carried out by applying radiofrequency pulses of N-dimensional nuclear Overhauser enhancement spectroscopy (NOESY).

8. The method according to claim 1, wherein said applying radiofrequency pulses is carried out by applying radiofrequency pulses of N-dimensional transverse relaxation optimized spectroscopy (TROSY).

9. The method according to claim 1, wherein said applying radiofrequency pulses is carried out so that spin-spin couplings are measured.

10. The method according to claim 9, wherein said spin-spin couplings are residual dipolar spin-spin coupling constants.

11. The method according to claim 1, wherein said jointly sampling the m indirect chemical shift evolution periods is achieved with a single continuous acquisition.

12. The method according to claim 1, wherein said applying radiofrequency pulses is carried out so that nuclear spin relaxation times are measured by sampling nuclear spin relaxation delays.

13. The method according to claim 12 further comprising:

jointly sampling said spin relaxation delays with chemical shift evolution periods.

14. The method according to claim 1, wherein N equals 5 and K equals 3 to conduct a (5,2)D [HACACONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) an α

-proton of amino acid residue i−

1, ¹H^α

<sub>i−

1</sub>;

(2) an α

-carbon of amino acid residue i−

1, ¹³C^α

<sub>i−

1</sub>;

(3) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>;

(4) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(5) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 4 chemical shift evolution periods of the 5D FT NMR experiment, ¹H^α

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, and ¹⁵N_i, and (c) said jointly sampling comprises jointly sampling the 4 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H^α

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, ¹⁵N_i).

15. The method according to claim 14, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 5D FT NMR experiment according to the scheme shown in FIG. 6.

16. The method according to claim 1, wherein N equals 5 and K equals 3 to conduct a (5,2)D [HACA,CONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having an amino acid residue, i, and the chemical shift values for the following nuclei are measured:

(1) an α

-proton of amino acid residue i−

1, ¹H^α

<sub>i−

1</sub>;

(2) an α

-carbon of amino acid residue i−

1, ¹³C^α

<sub>i−

1</sub>;

(3) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>;

(4) a polypeptide backbone amide nitrogen of amino acid residue i−

1, ¹⁵N<sub>i−

1</sub>; and

(5) a polypeptide backbone amide proton of amino acid residue i−

1, ¹H^N<sub>i−

1</sub>, (b) said selecting comprises selecting 4 chemical shift evolution periods of the 5D FT NMR experiment, ¹H^α

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, and ¹⁵N<sub>i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 4 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H^α

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, ¹⁵N<sub>i−

1</sub>).

17. The method according to claim 16, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 5D FT NMR experiment according to the scheme shown in FIG. 7A.

18. The method according to claim 1, wherein N equals 5 and K equals 2 to conduct a (5,3)D [HACACONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) an α

-proton of amino acid residue i−

1, ¹H^α

<sub>i−

1</sub>;

(2) an α

-carbon of amino acid residue i−

1, ¹³C^α

<sub>i−

1</sub>;

(3) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>;

(4) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(5) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹H^α

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, and ¹³C′

<sub>i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H^α

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>).

19. The method according to claim 1, wherein N equals 5 and K equals 2 to conduct a (5,3)D [HACA,CONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having an amino acid residue, i−

1, and the chemical shift values for the following nuclei are measured;

(1) an α

-proton of amino acid residue i−

1, ¹H^α

<sub>i−

1</sub>;

(2) an α

-carbon of amino acid residue i−

1, ¹³C^α

<sub>i−

1</sub>;

(3) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>;

(4) a polypeptide backbone amide nitrogen of amino acid residue i−

1, ¹⁵N<sub>i−

1</sub>; and

(5) a polypeptide backbone amide proton of amino acid residue i−

1, ¹H^N<sub>i−

1</sub>, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹H^α

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, and ¹³C′

<sub>i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H^α

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>).

20. The method according to claim 1, wherein N equals 4 and K equals 1 to conduct a (4,3)D [CBCACONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>;

(3) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(4) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 2 chemical shift evolution periods of the 4D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub> and ¹³C′

<sub>i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 2 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>).

21. The method according to claim 20, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 4D FT NMR experiment according to the scheme shown in FIG. 8.

22. The method according to claim 1, wherein N equals 4 and K equals 1 to conduct a (4,3)D [CBCA,CONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having an amino acid residue, i−

1, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>;

(3) a polypeptide backbone amide nitrogen of amino acid residue i−

1, ¹⁵N<sub>i−

1</sub>; and

(4) a polypeptide backbone amide proton of amino acid residue i−

1, ¹H^N<sub>i−

1</sub>, (b) said selecting comprises selecting 2 chemical shift evolution periods of the 4D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub> and ¹³C′

<sub>i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 2 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>).

23. The method according to claim 22, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 4D FT NMR experiment according to the scheme shown in FIG. 7B.

24. The method according to claim 1, wherein N equals 4 and K equals 1 to conduct a (4,3)D [HNNCACBCA] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residues i and i−

1, ¹³C<sup>α

/β</sup>

<sub>i/i−

1</sub>;

(2) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(3) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 2 chemical shift evolution periods of the 4D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i/i−

1</sub> and ¹³C^α

<sub>i/i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 2 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i/i−

1</sub>, ¹³C^α

<sub>i/i−

1</sub>).

25. The method according to claim 24, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 4D FT NMR experiment according to the scheme shown in FIG. 9.

26. The method according to claim 1, wherein N equals 4 and K equals 2 to conduct a (4,2)D [HNNCACBCA] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residues i and i−

1, ¹³C<sup>α

/β</sup>

<sub>i/i−

1</sub>;

(2) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(3) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 4D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i/i−

1</sub>, ¹³C^α

<sub>i/i−

1</sub>, and ¹⁵N_i, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i/i−

1</sub>, ¹³C^α

<sub>i/i−

1</sub>, ¹⁵N_i).

27. The method according to claim 1, wherein N equals 4 and K equals 1 to conduct a (4,3)D [HNN(CO)CACBCA] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(3) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 2 chemical shift evolution periods of the 4D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub> and ¹³C^α

<sub>i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 2 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>).

28. The method according to claim 27, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 4D FT NMR experiment according to the scheme shown in FIG. 10.

29. The method according to claim 1, wherein N equals 4 and K equals 2 to conduct a (4,2)D [HNN(CO)CACBCA] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(3) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 4D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, and ¹⁵N_i; and

(c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹⁵N_i).

30. The method according to claim 1, wherein N equals 5 and K equals 2 to conduct a (5,3)D [HNNCOCACBCA] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>, (3) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(4) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, and ¹³C′

<sub>i−

1</sub>, (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>).

31. The method according to claim 1, wherein N equals 5 and K equals 3 to conduct a (5,2)D [HNNCOCACBCA] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>−

1</sub>, (3) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(4) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 4 chemical shift evolution periods of the 5D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, and ¹⁵N_i; and

(c) said jointly sampling comprises jointly sampling the 4 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, ¹⁵N_i).

32. The method according to claim 1, wherein N equals 4 and K equals 1 to conduct a (4,3)D [CBCACA(CO)NHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(3) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 2 chemical shift evolution periods of the 4D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub> and ¹³C^α

<sub>i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 2 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>).

33. The method according to claim 32, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 4D FT NMR experiment according to the scheme shown in FIG. 11.

34. The method according to claim 1, wherein N equals 4 and K equals 2 to conduct a (4,2)D [CBCACA(CO)NHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(3) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 4D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, and ¹⁵N_i, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹⁵N_i).

35. The method according to claim 1, wherein N equals 5 and K equals 2 to conduct a (5,3)D [CBCACACONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>, (3) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(4) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, and ¹³C′

<sub>i−

1</sub>, (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>).

36. The method according to claim 1, wherein N equals 5 and K equals 3 to conduct a (5,2)D [CBCACACONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two consecutive amino acid residues, i−

1 and i, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>, (3) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(4) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 4 chemical shift evolution periods of the 5D FT NMR experiment, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, and ¹⁵N_i;

(c) said jointly sampling comprises jointly sampling the 4 chemical shift evolution periods in an indirect time domain dimension, t₁(¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, ¹⁵N_i).

37. The method according to claim 1, wherein N equals 5 and K equals 2 to conduct a (5,3)D [HBHACBCACA(CO)NHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two amino acid residues, i and i−

1, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

-protons of amino acid residue i−

1, ¹H<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(3) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(4) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹H<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, and ¹³C^α

<sub>i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>).

38. The method according to claim 37, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 5D FT NMR experiment according to the scheme shown in FIG. 12.

39. The method according to claim 1, wherein N equals 6 and K equals 3 to conduct a (6,3)D [HBHACBCACACONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two amino acid residues, i and i−

1, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

protons of amino acid residue i−

1, ¹H<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(3) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

i</sub>;

(4) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(5) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 4 chemical shift evolution periods of the 6D FT NMR experiment, ¹H<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, and ¹³C′

<sub>i−

1</sub>, and (c) said jointly sampling comprises jointly sampling the 4 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>).

40. The method according to claim 1, wherein N equals 5 and K equals 3 to conduct a (5,2)D [HBHACBCACA(CO)NHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two amino acid residues, i and i−

1, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

protons of amino acid residue i−

1, ¹H<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

_i1;

(3) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(4) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 4 chemical shift evolution periods of the 5D FT NMR experiment, ¹H<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, and ¹⁵N_i, and (c) said jointly sampling comprises jointly sampling the 4 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹⁵N_i).

41. The method according to claim 1, wherein N equals 6 and K equals 4 to conduct a (6,2)D [HBHACBCACACONHN] GFT NMR experiment, wherein (a) said sample is a protein molecule having two amino acid residues, i and i−

1, and the chemical shift values for the following nuclei are measured;

(1) α

- and β

protons of amino acid residue i−

1, ¹H<sup>α

/β</sup>

<sub>i−

1</sub>;

(2) α

- and β

-carbons of amino acid residue i−

1, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>;

(3) a polypeptide backbone carbonyl carbon of amino acid residue i−

1, ¹³C′

<sub>i−

1</sub>;

(4) a polypeptide backbone amide nitrogen of amino acid residue i, ¹⁵N_i; and

(5) a polypeptide backbone amide proton of amino acid residue i, ¹H^N_i, (b) said selecting comprises selecting 5 chemical shift evolution periods of the 6D FT NMR experiment, ¹H<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, and ¹⁵N_i, and (c) said jointly sampling comprises jointly sampling the 5 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C<sup>α

/β</sup>

<sub>i−

1</sub>, ¹³C^α

<sub>i−

1</sub>, ¹³C′

<sub>i−

1</sub>, ¹⁵N_i).

42. The method according to claim 1, wherein N equals 5 and K equals 2 to conduct a (5,3)D [HCC,CH-COSY] GFT NMR experiment, wherein (a) the chemical shift values for the following nuclei are measured:

(1) a proton, ¹H;

(2) a carbon coupled to ¹H, ¹³C; and

(3) a carbon coupled to ¹³C, ¹³C^coupled; and

(4) a proton coupled to ¹³C^coupled, ¹H^coupled, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹H, ¹³C, and ¹³C^coupled, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H, ¹³C, ¹³C^coupled).

43. The method according to claim 42, wherein said chemical shift evolution periods for ¹³C and ¹³C^coupled are correlated using total correlation spectroscopy (TOCSY).

44. The method according to claim 42, wherein (a) said sample is a protein molecule having an amino acid residue, i, and the chemical shift values for the following nuclei are measured:

(1) a proton of amino acid residue i, ¹H_i;

(2) a carbon of amino acid residue i coupled to ¹H_i, ¹³C_i; and

(3) a carbon coupled to ¹³C_i, ¹³C_i^coupled; and

(4) a proton coupled with ¹³C_i^coupled, ¹H_i^coupled, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹H_i, ¹³C_i, and ¹³C_i^coupled, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H_i, ¹³C_i, ¹³C_i^coupled).

45. The method according to claim 44, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 5D FT NMR experiment according to the scheme shown in FIG. 13.

46. The method according to claim 1, wherein N equals 5 and K equals 2 to conduct a (5,3)D [HBCBCGCDHD] GFT NMR experiment, wherein (a) said sample is a protein molecule having an amino acid residue, i, with an aromatic side chain, and the chemical shift values for the following nuclei are measured:

(1) a β

-proton of amino acid residue i, ¹H^β

_i;

(2) a β

-carbon of amino acid residue i, ¹³C^β

_i;

(3) a γ

-carbon of amino acid residue i, ¹³C^γ

_i;

(4) a δ

-carbon of amino acid residue i, ¹³C^δ

_i; and

(5) a δ

-proton of amino acid residue i, ¹H^δ

_i, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹H^β

_i, ¹³C^β

_i, and ¹³C^δ

_i, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H^β

_i, ¹³C<sup>β

i</sup>, ¹³C^δ

_i).

47. The method according to claim 46, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 5D FT NMR experiment according to the scheme shown in FIG. 14.

48. The method according to claim 1, wherein N equals 5 and K equals 3 to conduct a (5,2)D [HBCBCGCDHD] GFT NMR experiment, wherein (a) said sample is a protein molecule having an amino acid residue, i, with an aromatic side chain, and the chemical shift values for the following nuclei are measured:

(1) a β

-proton of amino acid residue i, ¹H^β

_i;

(2) a β

-carbon of amino acid residue i, ¹³C^β

_i;

(3) a γ

-carbon of amino acid residue i;

(4) a δ

-carbon of amino acid residue i, ¹³C^δ

_i; and

(5) a δ

-proton of amino acid residue i, ¹H^δ

_i, (b) said selecting comprises selecting 4 chemical shift evolution periods of the 5D FT NMR experiment, ¹H^β

_i, ¹³C^β

_i, ¹³C^γ

_i, and ¹³C^δ

_i, and (c) said jointly sampling comprises jointly sampling the 4 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H^β

_i, ¹³C^β

_i, ¹³C^γ

_i, ¹³C^δ

_i).

49. The method according to claim 1, wherein N equals 4 and K equals 2 to conduct a (4,2)D [HCCH-COSY] GFT NMR experiment, wherein (a) the chemical shift values for the following nuclei are measured:

(1) a proton, ¹H;

(2) a carbon coupled to ¹H, ¹³C;

(3) a carbon coupled to ¹³C, ¹³C^coupled; and

(4) a proton coupled to ¹³C^coupled, ¹H^coupled, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 4D FT NMR experiment, ¹H, ¹³C, and ¹³C^coupled, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H, ¹³C, ¹³C^coupled).

50. The method according to claim 49, wherein said chemical shift evolution periods for ¹³C and ¹³C^coupled are correlated using total correlation spectroscopy (TOCSY).

51. The method according to claim 49, wherein (a) said sample is a protein molecule having an amino acid residue, i, and the chemical shift values for the following nuclei are measured:

(1) a proton of amino acid residue i, ¹H_i;

(2) a carbon of amino acid residue i coupled to ¹H_i, ¹³C_i;

(3) a carbon coupled to ¹³C_i, ¹³C_i^coupled; and

(4) a proton coupled to ¹³C_i^coupled, ¹H_i^coupled, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 4D FT NMR experiment, ¹H_i, ¹³C_i, and ¹³C_i^coupled, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H_i, ¹³C_i, ¹³C_i^coupled).

52. The method according to claim 51, wherein said applying radiofrequency pulses comprises applying radiofrequency pulses for a 4D FT NMR experiment according to the scheme shown in FIG. 15.

53. The method according to claim 1, wherein N equals 5 and K equals 3 to conduct a (5,2)D [HCCCH-COSY] GFT NMR experiment, wherein (a) the chemical shift values for the following nuclei are measured:

(1) a proton ¹H;

(2) a carbon coupled to ¹H, ¹³C;

(3) a carbon coupled to ¹³C, ¹³C^coupled;

(4) a carbon coupled to ¹³C^coupled, ¹³C^coupled-2; and

(5) a proton coupled with ¹³C^coupled-2, ¹H^coupled-2, (b) said selecting comprises selecting 4 chemical shift evolution periods of the 5D FT NMR experiment, ¹H, ¹³C, ¹³C^coupled, and ¹³C^coupled-2, and (c) said jointly sampling comprises jointly sampling the 4 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H, ¹³C, ¹³C^coupled, ¹³C^coupled-2).

54. The method according to claim 53, wherein (a) said sample is a protein molecule having an amino acid residue, i, and the chemical shift values for the following nuclei are measured:

(1) a proton of amino acid residue i, ¹H_i;

(2) a carbon of amino acid residue i coupled to ¹H_i, ¹³C_i;

(3) a carbon coupled to ¹³C_i, ¹³C_i^coupled;

(4) a carbon coupled to ¹³C_i^coupled, ¹³C_i^coupled-2; and

(5) a proton coupled with ¹³C_i^coupled-2, ¹H_i^coupled-2, (b) said selecting comprises selecting 4 chemical shift evolution periods of the 5D FT NMR experiment, ¹H_i, ¹³C_i, ¹³C_i^coupled, and ¹³C_i^coupled-2, and (c) said jointly sampling comprises jointly sampling the 4 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H_i, ¹³C_i, ¹³C_i^coupled, ¹³C_i^coupled-2).

55. The method according to claim 1, wherein N equals 5 and K equals 3 to conduct a (5,3)D [HCCCH-COSY] GFT NMR experiment, wherein (a) the chemical shift values for the following nuclei are measured:

(1) a proton, ¹H;

(2) a carbon coupled to ¹H, ¹³C;

(3) a carbon coupled to ¹³C, ¹³C^coupled;

(4) a carbon coupled to ¹³C^coupled, ¹³C^coupled-2; and

(5) a proton coupled with ¹³C^coupled-2, ¹H^coupled-2, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹H, ¹³C, and ¹³C^coupled, and (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H, ¹³C, ¹³C^coupled).

56. The method according to claim 55, wherein (a) said sample is a protein molecule having an amino acid residue, i, and the chemical shift values for the following nuclei are measured:

(1) a proton of amino acid residue i, ¹H_i;

(2) a carbon of amino acid residue i coupled to ¹H_i, ¹³C_i;

(3) a carbon coupled to ¹³C_i, ¹³C_i^coupled;

(4) a carbon coupled to ¹³C_i^coupled, ¹³C_i^coupled-2; and

(5) a proton coupled with ¹³C_i^coupled-2, ¹H_i^coupled-2, (b) said selecting comprises selecting 3 chemical shift evolution periods of the 5D FT NMR experiment, ¹H_i, ¹³C_i, and ¹³C_i^coupled, (c) said jointly sampling comprises jointly sampling the 3 chemical shift evolution periods in an indirect time domain dimension, t₁(¹H_i, ¹³C_i, ¹³C_i^coupled).