Nucleic acids encoding desaturases and modified plant oil

• US 9,090,902 B2
• Filed: 08/25/2009
• Issued: 07/28/2015
• Est. Priority Date: 08/26/2008
• Status: Expired due to Fees

• Current Assignee: BASF Plant Science GmbH (BASF SE), Bioriginal Food & Science Corp. (Omega Protein Corporation)
• Original Assignee: BASF Plant Science GmbH (BASF SE), Bioriginal Food & Science Corp. (Omega Protein Corporation)
• Inventors: Bauer, Jrg, Senger, Toralf, Zank, Thorsten, Qiu, Xiao, Wu, Guohai
• Primary Examiner(s): O Hara, Eileen B
• Assistant Examiner(s): KEOGH, MATTHEW R
• Application Number:
  US13/060,458
• Publication Number:
  US 20110162105A1
• Time in Patent Office: 2,163 Days
• Field of Search: None
• US Class Current: 1/1
• CPC Class Codes: C12N 15/8247 involving modified lipid metabolism, e.g. seed oil composition
• CPC Class Codes: C12N 5/14 Plant cells
• CPC Class Codes: C12N 9/00 Enzymes; Proenzymes; Compositions thereof preparations containing enzymes for cleaning teeth A61K8/66, A61Q11/00; medicinal preparations containing enzymes or proenzymes A61K38/43; enzyme containing detergent compositions C11D; enzymes with nucleic acid structure, e.g. ribozymes, C12N15/113; Processes for preparing, activating, inhibiting, separating or purifying enzymes preparation of malt C12C1/00
• CPC Class Codes: C12N 9/0004 Oxidoreductases (1.)

Abstract

The present invention relates to nucleic acids derived from Drechslera tritici-repentis, Cylindorcarpon herteronema, Diploida natalensis, Stagonospora nodorum, Microdochium nivalae and Periplaneta americana. The invention also relates to the individual coding sequences and to proteins encoded by these sequences in combination with other sequences as well as to a process for converting oleic acid to linoleic acid to Iinoleic acid and the production of arachidonic acid, eicosapentaenoic acid and/or docosahexaenoic acid in a plant.

Claims

1. An expression cassette comprising a nucleic acid molecule operatively linked to at least one expression control sequence, wherein said nucleic acid molecule is heterologous in relation to said at least one expression control sequence and is selected from the group consisting of:

a) a nucleic acid molecule comprising the nucleotide sequence of SEQ ID NO;

3, 5, 33, 35 or 37;

b) a nucleic acid molecule encoding a polypeptide comprising the amino acid sequence of SEQ ID NO;

4, 6, 34, 36 or 38;

c) a nucleic acid molecule comprising a nucleotide sequence having at least 95% sequence identity to the nucleotide sequence of SEQ ID NO;

3, 5, 33, 35 or 37, wherein said nucleic acid molecule encodes a polypeptide having desaturase activity; and

d) a nucleic acid molecule encoding a polypeptide comprising an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO;

4, 6, 34, 36 or 38, wherein said polypeptide has desaturase activity.

2. A vector comprising the expression cassette of claim 1.

3. The vector of claim 2, which is an expression vector.

4. The vector of claim 3, wherein the at least one expression control sequence is a seed-specific promoter.

5. The vector of claim 4, wherein the seed-specific promoter is selected from the group consisting of Conlinin 1, Conlinin 2, napin, USP, LeB4, Arc, Fae, ACP, LuPXR, SBP and LuFad3.

6. A non-human host cell comprising the expression cassette of claim 1 or transformed with an expression vector comprising said expression cassette.

7. The non-human host cell of claim 6, wherein said host cell is a plant cell.

8. The non-human host cell of claim 7, wherein said plant cell is a cell obtained from an oilseed crop.

9. The non-human host cell of claim 8, wherein the oilseed crop is selected from the group consisting of flax (Linum sp.), rapeseed (Brassica sp.), soybean (Glycine and Soja sp.), sunflower (Helianthus sp.), cotton (Gossypium sp.), corn (Zea mays), olive (Olea sp.), safflower (Carthamus sp.), cocoa (Theobroma cacoa), peanut (Arachis sp.), hemp, camelina, crambe, oil palm, coconuts, groundnuts, sesame seed, castor bean, lesquerella, tallow tree, sheanuts, tungnuts, kapok fruit, poppy seed, jojoba seeds and perilla.

10. The non-human host cell of claim 6, wherein said host cell is a microbial cell.

11. The non-human host cell of claim 10, wherein the microbial cell is selected from the group consisting of Candida, Cryptococcus, Lipomyces, Rhodosporidium, Yarrowia, Thraustochytrium, Pythium, Schizochytrium and Crythecodinium.

12. A plant or plant seed comprising:

a) the expression cassette of claim 1;

b) a vector comprising the expression cassette of a), or

c) a host cell comprising the expression cassette of a) or transformed with the vector of b).

13. A method of producing a polypeptide comprising culturing the non-human host cell of claim 6 in an appropriate culture medium to, thereby, produce the polypeptide encoded by said nucleic acid molecule.

14. A polypeptide produced by the method of claim 13, wherein said polypeptide is a fusion protein comprising the polypeptide encoded by said nucleic acid molecule and a heterologous polypeptide.

15. A method for producing an unsaturated fatty acid, comprising culturing the non-human host cell of claim 6 or a plant or plant seed comprising said host cell such that the unsaturated fatty acid is produced, wherein said host cell is capable of producing oleic acid.

16. The method of claim 15, wherein said method further comprises a step of recovering the unsaturated fatty acid.

17. The method of claim 15, wherein the unsaturated fatty acid is selected from the group consisting of ARA 20:

4 (5,8,11,14), EPA 20;

5 (5,8,11,14,17), and DHA 22;

6 (4,7,10,13,16,19).

18. A method for the manufacture of oil comprising producing an unsaturated fatty acid according to the method of claim 15 and formulating or isolating an oil comprising said unsaturated fatty acid.

19. A method of producing a non-human host cell, plant or plant seed capable of generating an unsaturated fatty acid comprising introducing into a non-human host cell, plant or plant seed the expression cassette of claim 1 or a vector comprising said expression cassette.

20. A method of modulating the production of an unsaturated fatty acid, comprising culturing the non-human host cell of claim 6 or a plant or plant seed comprising said host cell such that modulation of the production of the unsaturated fatty acid occurs.

21. The method of claim 20, wherein said method further comprises a step of recovering the unsaturated fatty acid from said culture.

22. The method of claim 20, wherein the unsaturated fatty acid is selected from the group consisting of ARA 20:

4 (5,8,11,14), EPA 20;

5 (5,8,11,14,17), and DHA 22;

6 (4,7,10,13,16,19).

23. The expression cassette of claim 1, wherein the nucleic acid molecule comprises a nucleotide sequence having the nucleotide sequence of SEQ ID NO:

3, 5, 33, 35 or 37.

24. The expression cassette of claim 1, wherein the nucleic acid molecule comprises a nucleotide sequence that encodes a polypeptide comprising the amino acid sequence of SEQ ID NO:

4, 6, 34, 36 or 38.

25. The expression cassette of claim 1, wherein the nucleic acid molecule comprises a nucleotide sequence having at least 95% sequence identity to the nucleotide sequence of SEQ ID NO:

3, 5, 33, 35 or 37 wherein said nucleic acid molecule encodes a polypeptide having desaturase activity.

26. The expression cassette of claim 1, wherein the nucleic acid molecule comprises a nucleotide sequence that encodes a polypeptide comprising an amino acid sequence having at least 90% sequence identity to the amino acid sequence of SEQ ID NO:

4, 6, 34, 36 or 38, wherein said nucleic acid molecule encodes a polypeptide having desaturase activity.

27. The expression cassette of claim 1, wherein the nucleic acid molecule encodes a polypeptide having desaturase activity and comprising an amino acid sequence having at least 95% sequence identity to the amino acid sequence of SEQ ID NO:

4, 6, 34, 36 or 38.