Electric measurement of monolayers following pro-cleave detection of presence and activity of enzymes and other target analytes

• US 9,416,390 B2
• Filed: 07/26/2013
• Issued: 08/16/2016
• Est. Priority Date: 07/27/2012
• Status: Active Grant

• Current Assignee: Ohmx Corporation
• Original Assignee: Ohmx Corporation
• Inventors: Gaustad, Adam G., Ahrens, Michael J., Bertin, Paul A.
• Primary Examiner(s): Brown, Melanie Y
• Application Number:
  US13/952,345
• Publication Number:
  US 20140027310A1
• Time in Patent Office: 1,117 Days
• US Class Current: 1/1
• CPC Class Codes: C12Q 1/005 involving specific analytes or enzymes including groups of enzymes, e.g. oxydases; C12Q1/004 takes precedence
• CPC Class Codes: C12Q 1/37 involving peptidase or proteinase
• CPC Class Codes: G01N 2610/00 Assays involving self-assembled monolayers [SAMs]
• CPC Class Codes: G01N 33/5438 Electrodes

Abstract

This invention describes methods for detecting target analytes by utilizing an electroactive moiety (EAM) that functions as a substrate for a specific enzyme. If target analyte is present, a functional group is enzymatically removed from a transition metal complex resulting in quantifiable electrochemical signal at two unique potentials, E⁰₁ and E⁰₂ that is detected through a self-assembled monolayer (SAM) on an electrode.

Claims

1. A method for detecting at least one target analyte in a test sample, said method comprising:

(a) contacting a test sample with an electroactive moiety (EAM), wherein said EAM comprises a transition metal complex and an enzyme reactive moiety (ERM) and has a first E°

, and wherein said ERM is removed from at least a portion of said EAM in the presence of at least one target analyte in the test sample and results in said EAM having a second E⁰;

(b) detecting for a change between the first E⁰ and the second E⁰ of said EAM, wherein said change is an indication of the presence of said at least one target analyte,

wherein an assay mixture in a solution phase is formed in step (a) and prior to step (b), and further comprising contacting said assay mixture with a solid support comprising an electrode, under conditions such that a self assembled monolayer (SAM) forms on said electrode.

2. The method according to claim 1, wherein said at least one target analyte is an enzyme that removes said ERM from said EAM.

3. The method according to claim 1, wherein said at least one target analyte is bound between (i) a capture binding ligand bound to a second solid support and (ii) a soluble binding ligand comprising a surrogate enzyme, said surrogate enzyme is an enzyme that removes said ERM from said EAM.

4. The method according to claim 3, wherein when the method is to detect two or more test analytes in the test sample, the test sample is contacted with two or more EAMs, each EAM being-unique and comprising a unique ERM for a specific target analyte or surrogate enzyme such that two or more different target analytes are detected in said test sample.

5. The method according to claim 3, wherein said capture binding ligand and said soluble binding ligand each independently comprise a monoclonal antibody, a fragment of a monoclonal antibody, polyclonal antibodies, fragments of polyclonal antibodies, a protein, or a peptide.

6. The method according to claim 1, wherein said EAM further comprises a self-immolative moiety (SIM) which joins said ERM to said transition metal complex.

7. The method according to claim 1, wherein said ERM is an amino acid, peptide, acetate, lipid, carbohydrate, phosphate, or other functional group.

8. The method according to claim 1, wherein said at least one target analyte is a/an protease, peptidase, phosphatase, oxidase, hydrolase, lyase transferase, isomerase, or ligase.

9. The method according to claim 3, wherein said surrogate enzyme is a/an protease, peptidase, phosphatase, oxidase, hydrolase, lyase, transferase, isomerase, or ligase.

10. The method according to claim 1, wherein said target analyte is Prostate Specific Antigen (PSA).

11. The method according to claim 1, wherein said transition metal complex comprises iron, ruthenium, or osmium.

12. The method according claim 1, wherein said transition metal complex comprises ferrocene or substituted ferrocene.

13. The method according claim 1, wherein said EAM comprises a flexible oligomer anchor tethering said transition metal complex to said electrode, said flexible oligomer anchor being an oligomer with polar or charged functional groups in its main chain or side chains.

14. The method according to claim 13, wherein said flexible oligomer anchor comprising poly acrylic acid, polyethylene glycol (PEG), poly vinyl alcohol, polymethacrylate, poly vinyl-pyrrolidinone, acrylamide, maleic anhydride, poly vinylpyridine, allylamine, ethyleneimine, oxazoline, or other hydrophobic oligomer with side chains that limit intermolecular hydrophobic interactions and prevent organization and rigidity.

15. The method according to claim 1, wherein when the method is to detect two or more test analytes in the test sample, the test sample is contacted with two or more EAMs, each EAM being unique and comprising a unique ERM for a specific target analyte such that two or more different target analytes are detected in said test sample.

16. The method according to claim 1, wherein said at least one target analyte is an enzyme that activates a proenzyme, and wherein said proenzyme when activated removes said ERM from said EAM.

17. The method according to claim 1, wherein said at least one target analyte is bound between (i) a capture binding ligand bound to a second solid support and (ii) a soluble binding ligand comprising an enzyme tag, wherein said enzyme tag activates a proenzyme that removes said ERM from said EAM.

18. The method according to claim 1, further comprising one or more wash steps are performed prior to step b.

19. A method for detecting at least one target analyte in a test sample, said method comprising:

(a) contacting a test sample with an electroactive moiety (EAM) to form an assay mixture in solution phase, said EAM having a first E⁰ and comprising a transition metal complex and an enzyme reactive moiety (ERM), wherein said ERM is removed from at least a portion of said EAM in the presence of at least one target analyte in the test sample and results in said EAM having a second E⁰;

(b) contacting said assay mixture with a solid support comprising an electrode under conditions such that a self-assembled monolayer (SAM) forms on said electrode, said SAM comprising said EAM having said first E⁰ and said EAM having said second E⁰; and

(c) detecting for a change between the first E⁰ and the second E⁰ of said EAM, wherein said change is an indication of the presence of said at least one target analyte.