Genetically engineered and acid-resistant yeast cell with enhanced activity of radiation sensitivity complementing kinase and method of producing lactate by using the yeast cell

• US 9,758,770 B2
• Filed: 07/23/2015
• Issued: 09/12/2017
• Est. Priority Date: 07/24/2014
• Status: Active Grant

• Current Assignee: Samsung Electronics Co. Ltd.
• Original Assignee: Samsung Electronics Co. Ltd.
• Inventors: Lim, Huisub, Kim, Sungsoo, Song, Jiyoon, Lee, Soyoung, Lee, Juyoung, Cho, Kwangmyung
• Primary Examiner(s): Mondesi, Robert
• Assistant Examiner(s): EPSTEIN, TODD MATTHEW
• Application Number:
  US14/807,608
• Publication Number:
  US 20160024484A1
• Time in Patent Office: 782 Days
• Field of Search: None
• CPC Class Codes: C07K 14/39 from yeasts
• CPC Class Codes: C07K 14/395 from Saccharomyces
• CPC Class Codes: C12N 15/81 for yeasts
• CPC Class Codes: C12N 9/12 transferring phosphorus containing groups, e.g. kinases (2.7)
• CPC Class Codes: C12N 9/1205 Phosphotransferases with an alcohol group as acceptor (2.7.1), e.g. protein kinases
• CPC Class Codes: C12P 7/56 Lactic acid
• CPC Class Codes: C12Y 207/11001 Non-specific serine/threonine protein kinase (2.7.11.1), i.e. casein kinase or checkpoint kinase

Abstract

Provided is an acid-resistant yeast cell that is genetically engineered to enhance activity of a radiation sensitivity complementing kinase, and a method of producing lactate by using the yeast cell.

Claims

1. A recombinant acid-resistant yeast cell comprising increased radiation sensitivity complementing kinase (RCK) activity as compared to the RCK activity of a parent cell of the recombinant yeast cell, wherein the yeast cell comprises a genetic modification that increases the RCK activity,

wherein an activity of JEN1 is increased in the recombinant yeast cell as compared with that of a parent cell of the recombinant acid-resistant yeast cell;

wherein the recombinant acid-resistant yeast cell further comprises a polynucleotide encoding a lactate dehydrogenase; and

deletion or disruption of;

a gene encoding a polypeptide that converts pyruvate to acetaldehyde;

a gene encoding a polypeptide that converts lactate to pyruvate;

a gene encoding a polypeptide that converts dihydroxyacetone phosphate (DHAP) to glycerol-3-phosphate;

a gene encoding NDE1 or NDE2, or both a gene encoding NDE1 and a gene encoding NDE2;

a gene encoding a mitochondrial pyruvate carrier (MPC);

a gene encoding a polypeptide that converts pyruvate to oxaloacetate;

a gene encoding a polypeptide that converts acetaldehyde to ethanol; and

a gene encoding Fps1.

2. The recombinant yeast cell of claim 1, wherein the radiation sensitivity complementing kinase is classified under EC 2.7.11.1.

3. The recombinant yeast cell of claim 1, wherein the radiation sensitivity complementing kinase is RCK1 or RCK2.

4. The recombinant yeast cell of claim 1, wherein the radiation sensitivity complementing kinase comprises an amino acid sequence having at least 95% sequence identity with SEQ ID NO:

1 or 2.

5. The recombinant yeast cell of claim 1 comprising an increased expression level of a polynucleotide encoding the radiation sensitivity complementing kinase as compared to a parent cell of the recombinant yeast cell.

6. The recombinant yeast cell of claim 1 comprising an exogenous polynucleotide encoding the radiation sensitivity complementing kinase.

7. The recombinant yeast cell of claim 1 comprising an increased copy number of a gene encoding the radiation sensitivity complementing kinase in comparison to a parent cell of the recombinant yeast cell, or comprising a modification of an expression regulatory sequence of a gene encoding the radiation sensitivity complementing kinase, which causes the increased activity of a radiation sensitivity complementing kinase.

8. The recombinant yeast cell of claim 7 comprising an increased copy number of a gene encoding the radiation sensitivity complementing kinase in comparison to a parent cell of the recombinant yeast cell, wherein the increased copy number is due to the presence of an exogenous gene encoding the radiation sensitivity complementing kinase or amplification of an endogenous gene encoding the radiation sensitivity complementing kinase.

9. The recombinant yeast cell of claim 1, wherein the yeast cell belongs to Saccharomyces, Kluyveromyces, Candida, Pichia, Issatchenkia, Debaryomyces, Zygosaccharomyces, Shizosaccharomyces, or Saccharomycopsis.

10. The recombinant yeast cell of claim 1 wherein the polypeptide that converts pyruvate to acetaldehyde is classified as EC 4.1.1.1, the polypeptide that converts lactate to pyruvate is classified as EC 1.1.2.3 or EC 1.1.2.4, and the polypeptide that converts DHAP to glycerol-3-phosphate is classified as EC 1.1.1.8.

11. The recombinant yeast cell of claim 1, wherein the polypeptide that converts pyruvate to oxaloacetate is classified as EC 6.4.1.1, and the polypeptide that converts acetaldehyde to ethanol is classified as EC 1.1.1.1.

12. A method of producing lactate, the method comprising:

culturing the yeast cell of claim 1 to produce lactate.

13. The method of claim 12, wherein the method comprises:

collecting lactate from the culture.

14. The method of claim 12, wherein the culturing is performed under a condition within a range of pH 2 to 7.

15. A method for preparing a recombinant acid-resistant yeast cell of claim 1, the method comprising introducing into a yeast cell a genetic modification that increases the expression of a radiation sensitivity complementing kinase (RCK) in the yeast cell,

wherein the yeast cell further comprises or is modified to comprise an exogenous polynucleotide encoding JEN1;

a polynucleotide encoding a lactate dehydrogenase; and

deletion or disruption of;

a gene encoding a polypeptide that converts pyruvate to acetaldehyde;

a gene encoding a polypeptide that converts lactate to pyruvate;

a gene encoding a polypeptide that converts dihydroxyacetone phosphate (DHAP) to glycerol-3-phosphate;

a gene encoding NDE1 or NDE2, or both a gene encoding NDE1 and a gene encoding NDE2;

a gene encoding a mitochondrial pyruvate carrier (MPC);

a gene encoding a polypeptide that converts pyruvate to oxaloacetate;

a gene encoding a polypeptide that converts acetaldehyde to ethanol; and

a gene encoding Fps1.

16. The method of claim 15, wherein the expression of a radiation sensitivity complementing kinase is increased by increasing the copy number of a polynucleotide encoding the radiation sensitivity complementing kinase, or by modifying an expression regulatory sequence of a gene encoding the radiation sensitivity complementing kinase.

17. The method of claim 15, wherein the expression of a radiation sensitivity complementing kinase is increased by introducing into the yeast cell an exogenous polynucleotide that encodes the radiation sensitivity complementing kinase.