Assay method and apparatus with reduced sample matrix effects

• US 20060275841A1
• Filed: 12/19/2005
• Published: 12/07/2006
• Est. Priority Date: 12/20/2004
• Status: Abandoned Application

• Current Assignee: BioVeris Corporation (Roche Holding AG)
• Original Assignee: BioVeris Corporation (Roche Holding AG)
• Inventors: Blankfard, Martin, Curtis, Daniel, Ning, Qian, Macomber, Paul, Manteuffel, Richard, Davis, Charles Quentin, Kochar, Manish S.
• Application Number:
  US11/303,999
• Publication Number:
  US 20060275841A1
• Time in Patent Office: Days
• US Class Current: 435/7.500
• CPC Class Codes: G01N 1/34 Purifying; Cleaning processes or apparatus for extracting or separating nucleic acids from biological samples C12N15/1003
• CPC Class Codes: G01N 1/4077 by other techniques involving separation of suspended solids
• CPC Class Codes: G01N 33/5306 Improving reaction conditions, e.g. reduction of non-specific binding, promotion of specific binding
• CPC Class Codes: G01N 33/5375 by changing the physical or chemical properties of the medium or immunochemicals, e.g. temperature, density, pH, partitioning
• CPC Class Codes: G01N 33/54326 Magnetic particles
• CPC Class Codes: G01N 33/54393 Improving reaction conditions or stability, e.g. by coating or irradiation of surface, by reduction of non-specific binding, by promotion of specific binding
• CPC Class Codes: G01N 33/582 with fluorescent label

Abstract

The invention provides methods, kits, and apparatus for increasing the sensitivity of immunoassays performed on environmental samples by reducing sample matrix effects.

Claims

1. A method of analyzing a sample suspected of containing an analyte comprising:

(a) filtering the sample through a filter;

(b) adding a first labeled binding partner specific to said analyte;

(c) optionally adding a second binding partner specific to said analyte;

(d) adding an extraction buffer chosen from;

(i) an extraction buffer that has a pH≧

8 or pH≦

6 and an osmolarity greater than or equal to 0.1 osmol/L or

(ii) an extraction buffer that has an osmolarity greater than 1.1 osmol/L; and

(e) measuring the amount of the labeled first binding partner in complexes formed between the first binding partner, the analyte, and, if present, the second binding partner,

wherein steps (a) through (d) may be performed in any order and step (e) is performed last.

3. The method of claim 1, wherein the filter has a pore size rating less than or equal to about 10 μ

m and greater than or equal to about 1 μ

m.

6. The method of claim 1, wherein the extraction buffer has a pH ? 8 and an osmolarity greater than or equal to 0.8 osmol/L.

9. The method of any one of claims 1, 3, and 6, wherein the binding partner is labeled with an electrochemiluminescent (ECL) moiety.

19. The method of claim 1, wherein the method is a method for analyzing the sample for multiple analytes.

50. A kit for performing the method of claim 1 comprising a filter and at least one reagent selected from (a) an extraction buffer that has a pH≧

8 or pH≦

6 and an osmolarity greater than or equal to 0.1 osmol/L and (b) an extraction buffer that has an osmolarity greater than 1.1 osmol/L.

51. The kit of claim 50, wherein said extraction buffer has a pH>

8 and an osmolarity greater than or equal to 0.8 osmol/L.

2. (canceled)

4-5. -5. (canceled)

7-8. -8. (canceled)

10-18. -18. (canceled)

20-25. -25. (canceled)

26. A method of analyzing a sample suspected of containing an analyte comprising:

(a) filtering the sample through a filter;

(b) adding a labeled analog of the analyte

(c) adding a binding partner specific to said analyte;

(d) adding an extraction buffer chosen from;

(i) an extraction buffer that has a pH≧

8 or pH≦

6 and an osmolarity greater than or equal to 0.1 osmol/L and

(ii) an extraction buffer that has an osmolarity greater than 1.1 osmol/L; and

(e) measuring the amount of the labeled analog of the analyte bound to the binding partner,

wherein steps (a) through (d) may be performed in any order and step (e) is performed last.

28. The method of claim 26, wherein the filter has a pore size rating less than or equal to about 10 μ

m and greater than or equal to about 1 μ

m.

31. The method of claim 26, wherein the extraction buffer has a pH≧

8 and an osmolarity greater than or equal to 0.8 osmol/L.

34. The method of any one of claims 26, 28, and 31, wherein the binding partner is labeled with an electrochemiluminescent (ECL) moiety.

57. A kit for performing the method of claim 26, comprising a filter and at least one reagent selected from (a) an extraction buffer that has a pH≧

8 or pH≦

6 and an osmolarity greater than or equal to 0.1 osmol/L and (b) an extraction buffer that has an osmolarity greater than 1.1 osmol/L.

27. (canceled)

29-30. -30. (canceled)

32-33. -33. (canceled)

35-49. -49. (canceled)

52-56. -56. (canceled)

58-63. -63. (canceled)

64. An apparatus for use in analyzing sample suspected of containing one or more analytes comprising:

(a) a filter fluidically connected to a sampling device via a first one-way valve wherein the first one-way valve is oriented to allow flow from the sampling device to the filter;

(b) a waste line fluidically connected to a second one-way valve that is fluidically connected to a point fluidically between the first one-way valve and the filter where the second one-way valve is oriented to allow flow from the filter to the waste line;

(c) a pump arranged to be able to reversibly drive liquid flow across the filter;

(d) a binding reagent container that holds a labeled binding partner specific for each of said one or more analytes;

(e) means for depositing filtrate from said filter into said binding reagent container; and

(f) means for measuring the labeled binding partner.

66. The apparatus of claim 64 or 65 additionally comprising

(a) at least one working electrode for initiating electrochemiluminescence;

and

(b) a photodetector.

80. The apparatus of any one of claims 64 or 65, wherein the filter has a pore size rating less than or equal to about 10 μ

m and greater than or equal to about 1 μ

m.

65. An apparatus for use in analyzing sample suspected of containing one or more analytes comprising:

(a) a filter fluidically connected to a sampling device;

(b) a pump arranged to be able to drive liquid flow across the filter;

(c) a binding reagent container that holds a labeled binding partner specific for each of said one or more analytes;

(d) means for depositing filtrate from said filter into said binding reagent container; and

(e) means for measuring the labeled binding partner,

wherein at least one of the following elements applies;

(i) the apparatus further comprises at least one electrode;

(ii) the pump does not solely rely on capillary action to move liquids;

(iii) the pump is a positive displacement pump;

(iv) the apparatus further comprises a means for adding an extraction buffer to the sample;

(v) the apparatus further comprises a means for adding an extraction buffer to the sample before the sample contacts the filter; and

(vi) the sampling device is an air sampler.

67-75. -75. (canceled)

76. A sample filtering device comprising

(a) an upper container that is fluidically sealed from a lower container by a filter;

and

(b) an opening where the lower container can be accessed without going through the upper container.

77. The sample filtering device of claim 76, wherein the device has radial symmetry.

78-79. -79. (canceled)

81-82. -82. (canceled)