METHODS OF PRODUCING TRANSFORMATION COMPETENT BACTERIA

• US 20100047384A1
• Filed: 05/08/2007
• Published: 02/25/2010
• Est. Priority Date: 05/05/2006
• Status: Abandoned Application

• Current Assignee: Norwegian University of Life Sciences (Government of Norway)
• Original Assignee: Norwegian University of Life Sciences (Government of Norway)
• Inventors: Havarstein, Leiv Sigve, Blomqvist, Trinelise, Steinmoen, Hilde
• Application Number:
  US12/299,587
• Publication Number:
  US 20100047384A1
• Time in Patent Office: Days
• US Class Current: 426/7
• CPC Class Codes: C07K 14/315 from Streptococcus (G), e.g. Enterococci
• CPC Class Codes: C12N 1/20 Bacteria; Culture media therefor
• CPC Class Codes: C12N 15/63 Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
• CPC Class Codes: C12N 15/64 General methods for preparing the vector, for introducing it into the cell or for selecting the vector-containing host

Abstract

A method of producing transformation competent bacteria, comprising the steps of: (i) transforming a bacteria that is not naturally transformation competent with a plasmid, wherein said plasmid comprises a comX gene sequence encoding a ComX protein or functional part or derivative or variant thereof under the regulatory control of a promoter which is inducible by a transcription initiator, (ii) contacting said transformed bacteria with said transcription initiator to initiate transcription of said comX gene sequence is provided. Also provided are plasmids, transformed bacteria, transformation competent bacteria, mutant bacteria and food products comprising said mutant bacteria.

Claims

1. A method of producing transformation competent bacteria, comprising the steps of:

(i) transforming a bacteria that is not naturally transformation competent with a plasmid, wherein said plasmid comprises a comX gene sequence encoding a ComX protein or functional part or derivative or variant thereof under the regulatory control of a promoter which is inducible by a transcription initiator,

(ii) contacting said transformed bacteria with said transcription initiator to initiate transcription of said comX gene sequence.

2. The method of claim 1 wherein said bacteria is S thermophilus.

3. The method of claim 1, wherein said bacteria is S thermophilus strain LMG 18311.

4. The method of claim 1, wherein said comX gene sequence is from Streptococcus.

5. The method of claim 4 wherein said Streptococcus is S. thermophilus.

6. The method of claim 1, wherein said ComX gene sequence comprises:

(i) the nucleotide sequence of SEQ ID NO;

1;

or

(ii) a portion thereof;

or

(iii) a sequence which hybridizes to said sequence or portion thereof under non-stringent binding conditions and washing under conditions of high stringency;

or

(iv) a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof;

or

(v) a sequence complementary to any of the aforesaid sequences.

7. The method of claim 1, wherein said ComX gene sequence encodes an amino acid sequence which comprises:

(i) the amino acid sequence of SEQ ID NO;

2;

or

(ii) a portion thereof;

or

(iii) a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof.

8. The method of claim 6 or 7 wherein the portion of said ComX gene sequence comprises at least 400 bases of said sequences.

9. The method of claim 1, wherein said promoter that is induced by the transcription initiator is a bacteriocin promoter.

10. The method of claim 9 wherein said bacteriocin promoter is the bacteriocin promoter of S thermophilus.

11. The method of claim 1 wherein said promoter comprises:

(i) the nucleotide sequence of SEQ ID NO;

3;

or

(ii) a portion thereof;

or

(iii) a sequence which hybridizes to said sequence or portion thereof under non-stringent binding conditions and washing under conditions of high stringency;

or

(iv) a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof;

or

(v) a sequence complementary to any of the aforesaid sequences.

12. The method of claim 1 wherein said transcription initiator comprises:

(i) the amino acid sequence of SEQ ID NO;

4;

or

(ii) a portion thereof;

or

(iii) a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof.

13. The method of claim 1, wherein said transcription initiator comprises:

(i) the amino acid sequence SEQ ID NO;

5;

or

(ii) a portion thereof;

or

(iii) a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof.

14. The method of claim 1, wherein said plasmid further comprises a reporter gene under the control of a promoter.

15. The method of claim 14, wherein the reporter gene is under the control of a promoter which is induced as a result of expression of the comX gene.

16. The method of claim 15 wherein said promoter is the late gene comEC promoter.

18. The method of claim 1, wherein said plasmid is unstable in the bacteria.

19. The method of claim 1, wherein said plasmid is selected from

(i) the pXL plasmid,

(ii) a plasmid having at least 80% sequence identity to the pXL plasmid, and

(iii) a plasmid comprising a promoter and comX sequence with at least 80% identity to the promoter and comX sequence of the pXL plasmid.

28. Transformation competent bacteria produced according to the method of claim 1.

29. A method of producing a mutant bacteria comprising the steps of:

(i) contacting the transformation competent bacteria of claim 28 with homologous DNA comprising a mutation under conditions to allow transformation of said bacteria with said homologous DNA.

30. The method of claim 29 further comprising the steps of selecting and/or amplifying the mutant bacteria thus generated.

31. The method of claim 29, wherein the plasmid is unstable in the bacteria and said method further comprises the step of culturing said bacteria under conditions that cause said unstable plasmid to be lost from said bacteria.

32. The method of claim 1, wherein at least one step of said method is performed in growth medium that comprises one or more of heart infusion, neopeptone (or peptonen or peptone e.g. casein or yeast peptone), dextrose, sodium chloride, disodium phosphate, glucose and sodium carbonate.

33. The method of claim 32 wherein said growth medium comprises about 0.5 to about 10 g per litre heart infusion, about 10 to about 50 g per litre neopeptone, peptonen or peptone, about 0.5 to about 10 g per litre dextrose, about 0.5 to about 10 g per litre sodium chloride, about 0.1 to about 2 g per litre disodium phosphate, about 1.0 to about 5.0 g per litre sodium carbonate and about 0.1 to about 10% glucose.

34. Mutant bacteria produced according to the method of claim 29.

35. A method of producing a food product comprising at least the step of fermentation using the mutant of claim 34.

36. Food products generated by the method of claim 35.

37. The method of claim 14 further comprises the step of selecting and/or amplifying the transformation competent bacteria.

17. A method of producing transformation competent S. thermophilus bacteria, comprising at least the steps of:

(i) transforming a S. thermophilus bacteria with a plasmid, wherein said plasmid comprises a comX gene sequence which comprises;

(a) the nucleotide sequence of SEQ ID NO;

1;

or

(b) a portion thereof;

or

(c) a sequence which hybridizes to said sequence or portion thereof under non-stringent binding conditions and washing under conditions of high stringency;

or

(d) a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof;

or

(e) a sequence complementary to any of the aforesaid sequences;

under the regulatory control of a promoter comprising;

(a) the nucleotide sequence of SEQ ID NO;

3;

or

(b) a portion thereof;

or

(c) a sequence which hybridizes to said sequence or portion thereof under non-stringent binding conditions and washing under conditions of high stringency;

or

(d) a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof;

or

(e) a sequence complementary to any of the aforesaid sequences;

which is inducible by a transcription initiator comprising;

(a) the amino acid sequence of SEQ ID NO;

4;

or

(b) a portion thereof;

or

(c) a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof,

optionally further comprising a reporter gene under the control of said promoter; and

(ii) contacting said transformed bacteria with said transcription initiator to initiate transcription of said comX gene sequence.

38. The method of claim 17, wherein said plasmid is unstable in the bacteria.

39. The method of claim 17, wherein said plasmid is selected from

(i) the pXL plasmid,

(ii) a plasmid having at least 80% sequence identity to the pXL plasmid, and

(iii) a plasmid comprising a promoter and comX sequence with at least 80% identity to the promoter and comX sequence of the pXL plasmid.

40. Transformation competent bacteria produced according to the method of claim 17.

41. The method of claim 17, wherein at least one step of said method is performed in growth medium that comprises one or more of heart infusion, neopeptone (or peptonen or peptone e.g. casein or yeast peptone), dextrose, sodium chloride, disodium phosphate, glucose and sodium carbonate.

42. The method of claim 17 further comprises the step of selecting and/or amplifying the transformation competent S. thermophilus bacteria.

20. A plasmid comprising a comX gene sequence encoding a ComX protein or functional part or derivative or variant thereof under the regulatory control of a promoter which is inducible by a transcription initiator.

21. The plasmid of claim 20, wherein said plasmid further comprises a reporter gene under the control of a promoter.

22. The plasmid of claim 20, wherein said comX gene sequence comprises:

(i) the nucleotide sequence of SEQ ID NO;

1, or a portion thereof;

or a sequence which hybridizes to said sequence or portion thereof under non-stringent binding conditions and washing under conditions of high stringency, or a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof;

or a sequence complementary to any of the aforesaid sequences;

or

(ii) the amino acid sequence of SEQ ID NO;

2;

or a portion thereof;

or a sequence which exhibits at least 80% sequence identity to said sequence or portion thereof.

23. The plasmid of claim 20 wherein said promoter is a bacteriocin promoter.

24. The plasmid of claim 20 which is selected from

(i) the pXL plasmid,

(ii) a plasmid having at least 80% sequence identity to the pXL plasmid, and

(iii) a plasmid comprising a promoter and comX sequence with at least 80% identity to the promoter and comX sequence of the pXL plasmid.

25. Bacteria transformed with the plasmid of claim 20, wherein said bacteria is not naturally transformation competent prior to transformation.

26. The bacteria of claim 25 which is S. thermophilus.

27. A method of producing transformation competent bacteria, comprising contacting the transformed bacteria of claim 25 with a transcription initiator to initiate transcription of said comX gene sequence.