COMPOSITIONS AND METHODS FOR IMPROVING PLANTS

• US 20110185452A1
• Filed: 05/28/2009
• Published: 07/28/2011
• Est. Priority Date: 06/03/2008
• Status: Abandoned Application

• Current Assignee: insight genomics limited
• Original Assignee: insight genomics limited
• Inventors: Templeton, Kerry Robert, Bajaj, Shivendra, Bryant, Catherine Jane, Puthigae, Sathish
• Application Number:
  US12/936,194
• Publication Number:
  US 20110185452A1
• Time in Patent Office: Days
• US Class Current: 800/289
• CPC Class Codes: C07K 14/415 from plants
• CPC Class Codes: C12N 15/8261 with agronomic (input) traits, e.g. crop yield
• CPC Class Codes: Y02A 40/146 Genetically Modified [GMO] plants, e.g. transgenic plants

Abstract

The invention provides an isolated polynucleotide encoding a polypeptide with the sequence of SEQ ID NO: 1 or a variant thereof, wherein the variant is a polypeptide capable of modulating in a plant at least one of: i) biomass, ii) seed yield, and III) tolerance to at least one environmental stress selected from drought, cold, freezing, heat and salinity. The invention also provides, construct, vectors, host cells, plant cells and plants genetically modified to comprise the polynucleotide. The invention also provides methods for producing and selecting plants that are altered for at least one of: i) biomass, ii) seed yield, and iii) tolerance to at least one environmental stress selected from drought, cold, freezing, heat and salinity, making use of the polynucleotides of the invention.

Claims

1-43. -43. (canceled)

44. An isolated polynucleotide encoding a polypeptide comprising the sequence of SEQ ID NO:

1 or a variant thereof comprising a sequence with at least 82% identity to SEQ ID NO;

1, wherein % identity is calculated over the whole length of SEQ ID NO;

1.

45. The isolated polynucleotide of claim 44 wherein the variant is a polypeptide capable of modulating in a plant at least one of:

i) biomass,

ii) seed yield, and

iii) tolerance to at least one environmental stress selected from drought, cold, freezing, heat and salinity.

46. The isolated polynucleotide of claim 44, wherein the polypeptide or variant comprises an A20-type zinc finger domain and an AN1-type zinc finger domain.

47. The isolated polynucleotide of claim 46, wherein the A20-type domain is in the N terminal half of the polypeptide.

48. The isolated polynucleotide of claim 46, wherein the AN1-type domain is in the C terminal half of the polypeptide.

49. The isolated polynucleotide of claim 46, wherein the A20-type domain has the general formula:

X3-C-X(2-4)-C-X11-C-X2-C-X2, where X can be any amino acid.

50. The isolated polynucleotide of claim 46, wherein the AN1-type domain has the general formula:

C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C, where X can be any amino acid.

51. The isolated polynucleotide of claim 46, wherein the A20-type domain has at least 70% identity to sequence of SEQ ID NO:

16.

52. The isolated polynucleotide of claim 46, wherein the A20-type domain comprises the sequence of SEQ ID NO:

17.

53. The isolated polynucleotide of claim 46, wherein the A20-type domain comprises the sequence of SEQ ID NO:

16.

54. The isolated polynucleotide of claim 46, wherein the AN1-type domain has at least 70% identity to sequence of SEQ ID NO:

18.

55. The isolated polynucleotide of claim 46, wherein the AN1-type domain comprises the sequence of SEQ ID NO:

19.

56. The isolated polynucleotide of claim 46, wherein the AN1-type domain comprises of the sequence of SEQ ID NO:

18.

57. The isolated polynucleotide of claim 44, wherein the isolated polynucleotide encodes a polypeptide with the sequence of SEQ ID NO:

1.

58. The isolated polynucleotide of claim 44, wherein the isolated polynucleotide comprises a sequence with at least 70% identity to the coding sequence of SEQ ID NO:

7.

59. The isolated polynucleotide of claim 44, wherein the isolated polynucleotide comprises a sequence capable of hybridising under stringent conditions to the coding sequence of SEQ ID NO:

7.

60. The isolated polynucleotide of claim 44, wherein the isolated polynucleotide comprises the coding sequence of SEQ ID NO:

7.

61. The isolated polynucleotide of claim 44 comprising the sequence of SEQ ID NO:

7 or a variant thereof comprising a sequence with at least 82% identity to the coding sequence of SEQ ID NO;

7, wherein the variant encodes a polypeptide capable of modulating in a plant at least one of;

i) biomass,

ii) seed yield, and

iii) tolerance to at least one environmental stress selected from drought, cold, freezing, heat and salinity.

62. The isolated polynucleotide of claim 61, wherein the isolated polynucleotide comprises the coding sequence of SEQ ID NO:

7.

63. A polypeptide encoded by a polynucleotide of claim 44.

64. An isolated polynucleotide comprising a fragment, of at least 200 nucleotides in length, of a polynucleotide of claim 44.

65. A genetic construct, or expression construct, comprising a polynucleotide of claim 44.

66. A host cell comprising a genetic construct or expression construct of claim 65.

67. A host cell genetically modified to express a polynucleotide of claim 44.

68. A plant cell comprising a genetic construct or expression construct of claim 65.

69. A plant which comprises a plant cell of claim 68.

70. A method of producing a plant with at least one of:

i) altered biomass,

ii) altered seed yield, and

iii) altered tolerance to at least one environmental stress selected from drought, cold, freezing, heat and salinity,

the method comprising transformation of a plant cell or plant with;

a) a polynucleotide of claim 44;

b) a polynucleotide comprising a fragment, of at least 200 nucleotides in length, of the polynucleotide of a);

or

c) a polynucleotide comprising a complement of the polynucleotide of a) or b).

71. The method of claim 70 where both biomass and tolerance to at least one of the recited environmental stresses is altered in the plant.

72. The method of claim 70 wherein said alteration is an increase.

73. The method of claim 70, wherein the polynucleotide in iii) a) encodes a polypeptide comprising the sequence of any one of SEQ ID NO:

2 to 4 and 6.

74. A method for selecting a plant with at least one of:

i) altered biomass,

ii) altered seed yield, and

iii) altered tolerance to at least one environmental stress selected from drought, cold freezing, heat and salinity,

relative to suitable control plant, the method comprising testing of a plant for altered expression of a polynucleotide of claim 44 or a polypeptide encoded by the polynucleotide.

75. A plant cell or plant, produced by the method of claim 70, that is genetically modified to comprise a polynucleotide encoding a polypeptide comprising the sequence of SEQ ID NO:

1 or a variant thereof comprising a sequence with at least 82% identity to SEQ ID NO;

1, wherein % identity is calculated over the whole length of SEQ ID NO;

1.

76. A group, or population, of plants selected by the method of claim 74.

77. A part, fruit, seed, harvested material, propagule or progeny of a plant of claim 69.

78. A part, fruit, seed, harvested material, propagule or progeny of a plant of claim 69, that is genetically modified to comprise at least one polynucleotide encoding a polypeptide comprising the sequence of SEQ ID NO:

1 or a variant thereof comprising a sequence with at least 82% identity to SEQ ID NO;

1, wherein % identity is calculated over the whole length of SEQ ID NO;

1.